Assembly and intrahost/low-frequency variant calling for viral samples

SARS-CoV-2 workflow for nanopore sequence data

A toolkit for monitoring ONT MinION sequencing, followed by data analysis, for viral genomes amplified with tiled amplicon sequencing.

a set of tools for viral amplicon schemes

Climate science at high latitudes: eScience for linking Arctic measurements and modeling

quick demo of the ARTIC pipeline

Nextflow pipeline to process SARS-CoV-2 genomes by Nanopore Sequencing using ARTIC (https://github.com/artic-network/fieldbioinformatics) tools

Pipeline to generate consensus.fasta files and identify pangolin lineage and nextstrain clade of Sars-CoV-2 genomes from ONT sequencing

Preprocessing of raw reads obtained using ARTIC's protocol for sequencing SARS-CoV-2 genome.

Article Search Web-App

Nvim Nord color palette

App that uses React and the Art Institute of Chicago's API to allow users to browse different art pieces.

My goal is to see how the choice of a reference genome affects the artic pipelines accuracy.

CODEHOP-mediated genotyping of HIV-1

SINTONIZAR PID CON ARDUINO – CONTROL DE POSICIÓN DE UNA PELOTA EN LEVITACIÓN

ITMO — Semester 5 — ComputerSystems