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1. ONTmompS ONTmompS Public

   Get L. pneumophila ST from long-read or hybrid assemblies.

   Python 4

2. SeqDepth SeqDepth Public

   Calculate sequencing depth of Illumina short-reads

   Python 1 1

3. susCovONT susCovONT Public

   Pipeline to generate consensus.fasta files and identify pangolin lineage and nextstrain clade of Sars-CoV-2 genomes from ONT sequencing

   Python 1 2

4. msctrees msctrees Public

   Scripts that are part of our MSc-students' work

5. Asmbl Asmbl Public

   Assembly and quality assessment of Illumina short-reads

   Nextflow 2

6. ont-basecalling ont-basecalling Public

   Script for ONT-basecalling

   Python