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Carrot setup #1721

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Carrot setup #1721

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lbergelson
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PR to test setting up carrot.

@KevinCLydon I took your branch and added some stuff on it

  1. A dockerfile that just includes the htsjdk source so we can run tests
  2. A super basic test and eval wdl pair that doesn't actually use htsjdk at all
  3. I registered them all in carrot.

Now we need to:

  1. do the magic binding between carrot/docker/wdl
  2. make a real actual test that we can run in carrot

@lbergelson
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@cmnbroad once this is wired up we need to talk with you about creating the specific cram test. I'm not sure the best way to do it. I think we could either write a normal htsjdk test which has a path that gets filled in by the carrot test somehow, or we could write a little executable that runs the test given an argument. Either way wouldn't be too hard.

@lbergelson
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#carrot

@lbergelson
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@KevinCLydon I'm missing something, it's not using the result of the test workflow in the eval workflow when I invoke it manually. Is this not the right magic? test_output:test_workflow.result

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Wait, nevermind, I was confused about which test I ran.

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