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Improve GFF API by adding new convenience methods Build and Test #375: Commit dbebac3 pushed by lbergelson
October 29, 2024 16:27 20m 23s master
master
October 29, 2024 16:27 20m 23s
Treat .vcf.bgz as a valid vcf extension in FileExtension (#1727) Build and Test #374: Commit 4ea3285 pushed by lbergelson
October 29, 2024 16:23 18m 56s master
master
October 29, 2024 16:23 18m 56s
improve gff: add Locatable to Gff3BaseData, add 'Optional<String> getAttr(key)' and 'hasAttribute' Build and Test #373: Pull request #1726 synchronize by lindenb
October 29, 2024 15:47 19m 43s lindenb:pl_gtf_att
lindenb:pl_gtf_att
October 29, 2024 15:47 19m 43s
improve gff: add Locatable to Gff3BaseData, add 'Optional<String> getAttr(key)' and 'hasAttribute' Build and Test #372: Pull request #1726 synchronize by lindenb
October 29, 2024 15:03 19m 8s lindenb:pl_gtf_att
lindenb:pl_gtf_att
October 29, 2024 15:03 19m 8s
.vcf.bgz as a valid vcf extension in FileExtensions Build and Test #371: Pull request #1727 synchronize by lindenb
October 29, 2024 13:38 19m 4s lindenb:pl_vcfconstants
lindenb:pl_vcfconstants
October 29, 2024 13:38 19m 4s
.vcf.bgz as a valid vcf extension in FileExtensions Build and Test #370: Pull request #1727 opened by lindenb
October 29, 2024 12:58 18m 58s lindenb:pl_vcfconstants
lindenb:pl_vcfconstants
October 29, 2024 12:58 18m 58s
improve gff: add Locatable to Gff3BaseData, add 'Optional<String> getAttr(key)' and 'hasAttribute' Build and Test #369: Pull request #1726 opened by lindenb
October 29, 2024 11:12 19m 45s lindenb:pl_gtf_att
lindenb:pl_gtf_att
October 29, 2024 11:12 19m 45s
Add ReferenceSequenceFile.getSubsequenceAt(final Locatable locatable … Build and Test #368: Commit fd56496 pushed by lbergelson
October 28, 2024 20:56 20m 17s master
master
October 28, 2024 20:56 20m 17s
add ReferenceSequenceFile.getSubsequenceAt(final Locatable locatable ) shortcut to getSubsequenceAt(loc.getContig(), loc.getStart(), loc.getEnd()) Build and Test #367: Pull request #1725 opened by lindenb
October 28, 2024 13:31 20m 55s lindenb:pl_reference_locatable
lindenb:pl_reference_locatable
October 28, 2024 13:31 20m 55s
Adding additional java versions to our test matrix and toolchains Build and Test #366: Pull request #1723 opened by lbergelson
October 11, 2024 16:07 46s lb_add_new_versions_to_tests
lb_add_new_versions_to_tests
October 11, 2024 16:07 46s
Carrot setup Build and Test #365: Pull request #1721 synchronize by lbergelson
October 8, 2024 21:51 19m 47s lb_carrot
lb_carrot
October 8, 2024 21:51 19m 47s
Carrot setup Build and Test #364: Pull request #1721 synchronize by lbergelson
October 8, 2024 21:35 19m 52s lb_carrot
lb_carrot
October 8, 2024 21:35 19m 52s
Carrot setup Build and Test #363: Pull request #1721 synchronize by lbergelson
October 8, 2024 21:21 19m 58s lb_carrot
lb_carrot
October 8, 2024 21:21 19m 58s
Carrot setup Build and Test #362: Pull request #1721 opened by lbergelson
October 8, 2024 21:19 18m 49s lb_carrot
lb_carrot
October 8, 2024 21:19 18m 49s
Update commons compress to a 1.26.0 (#1720) Build and Test #361: Commit a37ffa6 pushed by lbergelson
October 7, 2024 21:34 20m 17s master
master
October 7, 2024 21:34 20m 17s
Update commons compress to a 1.26.0 Build and Test #360: Pull request #1720 opened by lbergelson
October 7, 2024 20:53 20m 40s lb_update_commons_compress
lb_update_commons_compress
October 7, 2024 20:53 20m 40s
Replace toPath().toString() with getURIString() (#1719) Build and Test #359: Commit 1cb5f07 pushed by cmnbroad
October 7, 2024 13:46 20m 3s master
master
October 7, 2024 13:46 20m 3s
Replace toPath().toString() with getURIString() Build and Test #358: Pull request #1719 opened by lbergelson
October 4, 2024 21:48 18m 52s lb_use_full_uri
lb_use_full_uri
October 4, 2024 21:48 18m 52s
SamReaderFactory opens non-regular File and Path the same way (#1717) Build and Test #357: Commit 4c1c766 pushed by lbergelson
October 2, 2024 14:52 20m 28s master
master
October 2, 2024 14:52 20m 28s
SamReaderFactory opens non-regular File and Path the same way Build and Test #356: Pull request #1717 opened by kshakir
September 29, 2024 16:53 19m 15s kshakir:ks_srf_open_irregular_path
kshakir:ks_srf_open_irregular_path
September 29, 2024 16:53 19m 15s
Make Snappy technically an optional dependency (#1715) Build and Test #355: Commit 966737b pushed by lbergelson
September 17, 2024 16:59 19m 55s master
master
September 17, 2024 16:59 19m 55s
Make Snappy technically an optional dependency Build and Test #354: Pull request #1715 opened by lbergelson
September 17, 2024 16:01 19m 39s lb_separate_snappy_loading
lb_separate_snappy_loading
September 17, 2024 16:01 19m 39s
Implementation of CRAM 3.1 codecs. Build and Test #353: Pull request #1714 opened by cmnbroad
September 4, 2024 15:55 17m 59s cn_cram_3_1_codecs
cn_cram_3_1_codecs
September 4, 2024 15:55 17m 59s
Support reference bundles. Build and Test #352: Pull request #1713 synchronize by cmnbroad
September 3, 2024 18:59 20m 19s cn_ref_bundles
cn_ref_bundles
September 3, 2024 18:59 20m 19s
Implement VCF bundles. (#1703) Build and Test #351: Commit 46f6f0f pushed by cmnbroad
September 3, 2024 18:36 19m 56s master
master
September 3, 2024 18:36 19m 56s