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phylogeography

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  1. SPREADv1 SPREADv1 Public

    Spatial Phylogenetic Reconstruction of Evolutionary Dynamics

    Java 20 9

  2. spread spread Public

    Spread visualizes how viruses and other pathogens are spreading in time and space. It creates compellable shareable, interactive and time-animated visualization.

    Clojure 15

  3. SpreaD3 SpreaD3 Public

    Spatial Phylogenetic Reconstruction of Evolutionary Dynamics 3

    Java 13 7

  4. HIVmixedEffectsClock HIVmixedEffectsClock Public

    A mixed effects clock model application to HIV-1 groupM

    3

  5. travelHistory travelHistory Public

    Repo associated with a manuscript on including travel history in Bayesian phylogeographic inference

    2

  6. d3-renderer d3-renderer Public

    Renderer for SpreaD3 JSON files.

    JavaScript 1 1

Repositories

Showing 10 of 13 repositories
  • GLEAM-phylogeography Public

    This repo contains the analyses files for a study that connects the GLEAM (Global Epidemic and Mobility) model to phylogeography

    phylogeography/GLEAM-phylogeography’s past year of commit activity
    0 MIT 0 0 0 Updated Mar 3, 2024
  • sarbecovirus_phylogeography Public
    phylogeography/sarbecovirus_phylogeography’s past year of commit activity
    1 0 1 0 Updated Feb 9, 2024
  • spread Public

    Spread visualizes how viruses and other pathogens are spreading in time and space. It creates compellable shareable, interactive and time-animated visualization.

    phylogeography/spread’s past year of commit activity
    Clojure 15 MIT 0 12 2 Updated Oct 27, 2023
  • SpreaD3 Public

    Spatial Phylogenetic Reconstruction of Evolutionary Dynamics 3

    phylogeography/SpreaD3’s past year of commit activity
    Java 13 LGPL-3.0 7 19 1 Updated Apr 28, 2023
  • SARS-CoV-2_EUR_PHYLOGEOGRAPHY Public
    phylogeography/SARS-CoV-2_EUR_PHYLOGEOGRAPHY’s past year of commit activity
    1 0 0 0 Updated May 30, 2021
  • travelHistory Public

    Repo associated with a manuscript on including travel history in Bayesian phylogeographic inference

    phylogeography/travelHistory’s past year of commit activity
    2 0 0 0 Updated Sep 13, 2020
  • HIVmixedEffectsClock Public

    A mixed effects clock model application to HIV-1 groupM

    phylogeography/HIVmixedEffectsClock’s past year of commit activity
    3 0 1 0 Updated Nov 23, 2019
  • SPREADv1 Public

    Spatial Phylogenetic Reconstruction of Evolutionary Dynamics

    phylogeography/SPREADv1’s past year of commit activity
    Java 20 LGPL-3.0 9 5 1 Updated Jan 13, 2019
  • spreaD3-web Public

    REST Web Services to spreaD3

    phylogeography/spreaD3-web’s past year of commit activity
    Java 0 1 0 0 Updated Jun 12, 2017
  • spreaD3-web-ui Public

    User interface for Spread3-web.

    phylogeography/spreaD3-web-ui’s past year of commit activity
    Clojure 0 0 0 0 Updated Jun 7, 2017
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