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    13 repositories

    • GLEAM-phylogeography

      Public
      This repo contains the analyses files for a study that connects the GLEAM (Global Epidemic and Mobility) model to phylogeography
      MIT License
      •0•0•0•0•Updated Mar 3, 2024Mar 3, 2024

    • sarbecovirus_phylogeography

      Public
      0•1•1•0•Updated Feb 9, 2024Feb 9, 2024

    • spread

      Public
      Spread visualizes how viruses and other pathogens are spreading in time and space. It creates compellable shareable, interactive and time-animated visualization.
      data-scienceclojurescriptdata-visualizationvirusesphylogeographygraph-visualisationspreadcovid-19covidcovid19
      Clojure
      •
      MIT License
      •0•15•12•2•Updated Oct 27, 2023Oct 27, 2023

    • SpreaD3

      Public
      Spatial Phylogenetic Reconstruction of Evolutionary Dynamics 3
      Java
      •
      GNU Lesser General Public License v3.0
      •7•13•19•1•Updated Apr 28, 2023Apr 28, 2023

    • SARS-CoV-2_EUR_PHYLOGEOGRAPHY

      Public
      0•1•0•0•Updated May 30, 2021May 30, 2021

    • travelHistory

      Public
      Repo associated with a manuscript on including travel history in Bayesian phylogeographic inference
      0•2•0•0•Updated Sep 13, 2020Sep 13, 2020

    • HIVmixedEffectsClock

      Public
      A mixed effects clock model application to HIV-1 groupM
      0•3•1•0•Updated Nov 23, 2019Nov 23, 2019

    • SPREADv1

      Public
      Spatial Phylogenetic Reconstruction of Evolutionary Dynamics
      Java
      •
      GNU Lesser General Public License v3.0
      •9•20•5•1•Updated Jan 13, 2019Jan 13, 2019

    • spreaD3-web

      Public
      REST Web Services to spreaD3
      Java
      •1•0•0•0•Updated Jun 12, 2017Jun 12, 2017

    • spreaD3-web-ui

      Public
      User interface for Spread3-web.
      Clojure
      •0•0•0•0•Updated Jun 7, 2017Jun 7, 2017

    • d3-renderer

      Public
      Renderer for SpreaD3 JSON files.
      JavaScript
      •1•1•12•0•Updated Feb 8, 2017Feb 8, 2017

    • phylogeography.github.io

      Public
      Phylogeography material
      CSS
      •0•1•0•0•Updated Nov 9, 2016Nov 9, 2016

    • SpreaD3-tutorial

      Public
      Tutorial describing how to use the software
      TeX
      •0•1•1•0•Updated Mar 9, 2016Mar 9, 2016