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@OHDSI Observational Health Data Sciences and Informatics

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    309 repositories

    • PhenotypeChangesInVocabUpdate

      Public
      R
      •0•2•0•0•Updated Oct 31, 2024Oct 31, 2024

    • SelfControlledCaseSeries

      Public
      An R package for performing Self-Controlled Case Series (SCCS) analyses in an observational database in the OMOP Common Data Model.
      hades
      R
      •8•13•10•0•Updated Oct 31, 2024Oct 31, 2024

    • GIS

      Public
      R
      •
      Apache License 2.0
      •9•10•140•2•Updated Oct 31, 2024Oct 31, 2024

    • CohortConstructor

      Public
      R
      •
      Apache License 2.0
      •0•1•33•4•Updated Oct 31, 2024Oct 31, 2024

    • Ares

      Public
      A Research Exploration System
      Vue
      •
      Apache License 2.0
      •6•12•42•2•Updated Oct 31, 2024Oct 31, 2024

    • Vocabulary-v5.0

      Public
      Build process for the OHDSI Standardized Vocabularies. Currently not available as independent release.
      PLpgSQL
      •
      The Unlicense
      •75•220•216•19•Updated Oct 31, 2024Oct 31, 2024

    • OmopSketch

      Public
      R
      •
      Apache License 2.0
      •0•2•22•0•Updated Oct 31, 2024Oct 31, 2024

    • dbt-synthea

      Public
      [Under development] A dbt ETL project to convert a Synthea synthetic data set into the OMOP CDM
      Python
      •
      Apache License 2.0
      •5•15•19•3•Updated Oct 31, 2024Oct 31, 2024

    • ETL-LambdaBuilder

      Public
      CDM Builder leveraging AWS Lambda
      C#
      •
      Apache License 2.0
      •15•14•1•4•Updated Oct 30, 2024Oct 30, 2024

    • PhenotypeR

      Public
      R
      •
      Apache License 2.0
      •0•1•7•0•Updated Oct 30, 2024Oct 30, 2024

    • Tutorial-Hades

      Public
      Materials used for tutorials on HADES
      JavaScript
      •3•3•0•0•Updated Oct 30, 2024Oct 30, 2024

    • Arachne

      Public
      Arachne Data Node web application
      TypeScript
      •
      Apache License 2.0
      •1•1•14•1•Updated Oct 30, 2024Oct 30, 2024

    • ArachneExecutionEngine

      Public
      Arachne Execution Engine is a component used to execute remote SQL or R code. It is used by both Arachne Data Node as well as WebAPI
      PLpgSQL
      •8•8•2•1•Updated Oct 30, 2024Oct 30, 2024

    • CohortSymmetry

      Public
      R
      •
      Apache License 2.0
      •0•1•22•0•Updated Oct 30, 2024Oct 30, 2024

    • ClinicalCharacteristics

      Public
      [under development] table shell approach to OMOP characterization
      R
      •
      Apache License 2.0
      •0•0•10•1•Updated Oct 29, 2024Oct 29, 2024

    • CommunityDashboard

      Public
      Dashboard to monitor the health of the OHDSI community. A Flask app of Dash Dashboards for tracking public API's
      TypeScript
      •
      Apache License 2.0
      •1•5•11•0•Updated Oct 29, 2024Oct 29, 2024

    • Strategus

      Public
      [Under development] An R packages for coordinating and executing analytics using HADES modules
      R
      •12•7•17•3•Updated Oct 29, 2024Oct 29, 2024

    • DeepPatientLevelPrediction

      Public
      An R package for performing patient level prediction using deep learning in an observational database in the OMOP Common Data Model.
      hadesdeep-learning
      R
      •4•11•19•2•Updated Oct 29, 2024Oct 29, 2024

    • Atlas

      Public
      ATLAS is an open source software tool for researchers to conduct scientific analyses on standardized observational data
      JavaScript
      •
      Apache License 2.0
      •136•271•219•17•Updated Oct 29, 2024Oct 29, 2024

    • WebAPI

      Public
      OHDSI WebAPI contains all OHDSI services that can be called from OHDSI applications
      Java
      •
      Apache License 2.0
      •167•129•133•22•Updated Oct 29, 2024Oct 29, 2024

    • SqlRender

      Public
      This is an R package and Java library for rendering parameterized SQL, and translating it to different SQL dialects.
      hades
      R
      •
      Other
      •77•82•8•0•Updated Oct 29, 2024Oct 29, 2024

    • webapi-shiny

      Public
      [Under development] Holds dependencies for WebAPI Shiny apps
      Apache License 2.0
      •0•1•0•0•Updated Oct 28, 2024Oct 28, 2024

    • OmopViewer

      Public
      R
      •
      Apache License 2.0
      •0•1•22•1•Updated Oct 28, 2024Oct 28, 2024

    • PatientLevelPrediction

      Public
      An R package for performing patient level prediction in an observational database in the OMOP Common Data Model.
      hades
      HTML
      •88•188•69•3•Updated Oct 28, 2024Oct 28, 2024

    • Bouzyges

      Public
      Python
      •
      GNU General Public License v3.0
      •1•4•0•0•Updated Oct 27, 2024Oct 27, 2024

    • omock

      Public
      R
      •
      Apache License 2.0
      •1•2•3•0•Updated Oct 25, 2024Oct 25, 2024

    • DataQualityDashboard

      Public
      A tool to help improve data quality standards in observational data science.
      data-quality
      JavaScript
      •
      Apache License 2.0
      •96•142•53•7•Updated Oct 25, 2024Oct 25, 2024

    • webapi-wiki

      Public
      WebAPI Wiki Content
      Apache License 2.0
      •4•2•1•0•Updated Oct 24, 2024Oct 24, 2024

    • CohortMethod

      Public
      An R package for performing new-user cohort studies in an observational database in the OMOP Common Data Model.
      hades
      R
      •57•82•12•1•Updated Oct 24, 2024Oct 24, 2024

    • Cyclops

      Public
      Cyclops (Cyclic coordinate descent for logistic, Poisson and survival analysis) is an R package for performing large scale regularized regressions.
      hades
      C++
      •32•38•20•1•Updated Oct 24, 2024Oct 24, 2024