WIP: NeuroML conversion #1
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Move over original files to NEURON folder
We can enable other engines once we have a full cell to test
Requires jNeuroML with these changes so that new annotations are known to LEMS: NeuroML/NeuroML2#225
Note: hard coded
This reverts commit e9561bc.
This reverts commit fb3ab85.
This is taken from https://github.com/OpenSourceBrain/SolinasEtAl-GolgiCell/ where a version already existed. However, a couple of parameters had been tweaked: - diff is 1 instead of 3 - qt10factor is 2.7 instead of 3 I've also copied over the calcium clamp implementations to verify the states. The test script now also inserts calcium if required and plots it. The NML file can probably be simplified a little to unify the rate related component types. I'll look into that later, though.
re-use it from the main gateKS component
Almost there, but O values are smaller than they should be.
So I can compare the current densities
now testing with some calcium clamping
It's used in both CaT and CaP channels.
Note that this channel reads calcium concentration but does not contribute to it, producing a different current density, much like a calcium dependent potassium channel. So, we use a different ion here to distinguish it from the "standard" calcium ion. When using this channel, we need to remember to set this particular ion in the GHK channel density also.
Now we get exact matches to NEURON.
Perhaps not needed, since I have checked all mechs individually in single compartment cells
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