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@github-actions github-actions released this 31 Mar 13:03
· 15 commits to master since this release
v0.16.0
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PhyloNetworks v0.16.0

Diff since v0.15.3

breaking changes:

  • Getter names (getchild, getparent etc.) were changed with standardized names, and are now exported.
    Old getter names are deprecated, so users should run julia with deprecation warnings (julia --depwarn=yes) to get info on new names to update their code.
  • PhyloNetworkLinearModel's are no longer wrapped in a TableRegressionModel
  • Evolutionary model of TraitSimulation and PhyloNetworkLinearModel objects: now in field 'evomodel'

new:

  • more accessors, e.g. getroot, isleaf, isexternal, isrootof, isparentof, ischildof

bug fixes:

  • in get and setGammas: fixed to work with non-tree-child networks
  • in addAlternativeHybridizations!

Closed issues:

  • performance suggestion make trees more type stable (#155)
  • Ghost introgression (#192)

Merged pull requests:

  • CompatHelper: bump compat for Functors to 0.4, (keep existing compat) (#189) (@github-actions[bot])
  • standardize and export getter names (#190) (@cecileane)
  • Get rid of Tableregressionmodel (#194) (@pbastide)
  • CompatHelper: bump compat for StatsModels to 0.7, (keep existing compat) (#195) (@github-actions[bot])
  • near v0.16.0 (#196) (@cecileane)

Contributors

pbastide and cecileane
Assets 2
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