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Pull requests: wtsi-npg/p4

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9 Open 335 Closed
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Pull requests list

P4 stage2 init options invalid
#348 opened Aug 21, 2024 by dozy Loading…
first try at adding stage2 preprocessing options duplicate invalid
#334 opened Feb 8, 2024 by dozy Loading…
add optional stage1 methods to allow analysis using product crams as input (instead of default BCL) work in progress
#331 opened Nov 21, 2023 by dozy Loading…
@dozy
inheritance of undef parameter values bug duplicate work in progress
#330 opened Nov 21, 2023 by dozy Loading…
@dozy
1
add primer_clip_unmap_len_flag and primer_clip_arbitrary_flags to sam…
#327 opened Oct 3, 2023 by dozy Loading…
@srl147
Switched to use samtools merge and samtools markdup
#281 opened Apr 22, 2020 by jidur Loading…
@dozy
1
pre-alignment collate options work in progress
#268 opened Nov 28, 2019 by dozy Loading…
scramble compression flags (bam to cram) work in progress
#266 opened Sep 18, 2019 by dozy Loading…
2
introduce post-run cleanup for viv work in progress
#261 opened Apr 12, 2019 by dozy Loading…
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