fix subset covariates to support out of order covariates. Covariates … #227
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| on: | |
| push: | |
| branches: | |
| - master | |
| - devel | |
| pull_request: | |
| branches: | |
| - master | |
| - devel | |
| name: R-CMD-check | |
| jobs: | |
| R-CMD-check: | |
| runs-on: ${{ matrix.config.os }} | |
| name: ${{ matrix.config.os }} (${{ matrix.config.r }}) | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - {os: ubuntu-latest, r: 'release'} | |
| - {os: macOS-latest, r: 'release'} | |
| - {os: windows-latest, r: 'release'} | |
| env: | |
| R_REMOTES_NO_ERRORS_FROM_WARNINGS: true | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| steps: | |
| - name: Checkout repo | |
| uses: actions/checkout@v3 | |
| - name: Setup R | |
| uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: ${{ matrix.config.r }} | |
| - name: Install pandoc | |
| uses: r-lib/actions/setup-pandoc@v2 | |
| - name: Install tinyTeX | |
| uses: r-lib/actions/setup-tinytex@v2 | |
| - name: Install system dependencies | |
| if: runner.os == 'Linux' | |
| run: | | |
| sudo apt install -y curl libcurl4-doc libcurl4-openssl-dev | |
| sudo $(which R) CMD javareconf | |
| - name: Install package dependencies | |
| run: | | |
| install.packages(c("remotes", "devtools", "rcmdcheck", "covr", "sessioninfo")) | |
| remotes::install_deps(dependencies = TRUE) | |
| shell: Rscript {0} | |
| - name: Check package | |
| run: | | |
| options(crayon.enabled = TRUE) | |
| rcmdcheck::rcmdcheck(args = "--no-manual", error_on = "error") | |
| shell: Rscript {0} | |
| - name: Upload code coverage | |
| if: runner.os == 'Linux' | |
| run: | | |
| covr::codecov() | |
| shell: Rscript {0} |