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Feature/3299 improve ess mcse #3305

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Feature/3299 improve ess mcse #3305

wants to merge 90 commits into from

Commits on Jul 11, 2024

  1. Merge branch 'develop' of https://github.com/stan-dev/stan into develop

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    mitzimorris committed Jul 11, 2024
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Commits on Jul 16, 2024

  1. Merge branch 'develop' of https://github.com/stan-dev/stan into develop

    @mitzimorris
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Commits on Jul 17, 2024

  1. code readibility

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  2. code readibility

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    mitzimorris committed Jul 17, 2024
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  3. code cleanup

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    mitzimorris committed Jul 17, 2024
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  4. code cleanup

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  5. code cleanup

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    mitzimorris committed Jul 17, 2024
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Commits on Jul 19, 2024

  1. checkpointing

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Commits on Jul 23, 2024

  1. checkpointing

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  2. Merge branch 'develop' of https://github.com/stan-dev/stan into develop

    @mitzimorris
    mitzimorris committed Jul 23, 2024
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  3. unit tests for added logic

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    mitzimorris committed Jul 23, 2024
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  4. checks and unit tests

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    mitzimorris committed Jul 23, 2024
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  5. lint fix

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    mitzimorris committed Jul 23, 2024
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  6. [Jenkins] auto-formatting by clang-format version 10.0.0-4ubuntu1

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  7. Merge branch 'bugfix/3301-stan-csv-reader-skip-warmup' of https://git… 

    …hub.com/stan-dev/stan into feature/3299-improve-ESS-MCSE
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  8. adding test file

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    mitzimorris committed Jul 23, 2024
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  9. fix divide by zero error

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    mitzimorris committed Jul 23, 2024
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  10. [Jenkins] auto-formatting by clang-format version 10.0.0-4ubuntu1

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  11. Merge branch 'bugfix/3301-stan-csv-reader-skip-warmup' of https://git… 

    …hub.com/stan-dev/stan into feature/3299-improve-ESS-MCSE
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Commits on Jul 24, 2024

  1. refactoring, checkpointing

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Commits on Jul 26, 2024

  1. Merge branch 'develop' of https://github.com/stan-dev/stan into featu… 

    …re/3299-improve-ESS-MCSE
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  2. checkpointing

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Commits on Jul 30, 2024

  1. checkpointing

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Commits on Jul 31, 2024

  1. checkpointing; unit tests pass

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  2. checkpointing; unit tests pass

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  3. checkpointing

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  4. checkpointing

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  5. Merge commit '01f592383cf29f2483451b9d5b4718666a50b3a8' into HEAD

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  6. [Jenkins] auto-formatting by clang-format version 10.0.0-4ubuntu1

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  7. Merge branch 'feature/3299-improve-ESS-MCSE' of https://github.com/st… 

    …an-dev/stan into feature/3299-improve-ESS-MCSE
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  8. checkpointing; disagreement w/ CmdStanR

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  9. [Jenkins] auto-formatting by clang-format version 10.0.0-4ubuntu1

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  10. Merge branch 'feature/3299-improve-ESS-MCSE' of https://github.com/st… 

    …an-dev/stan into feature/3299-improve-ESS-MCSE
    @mitzimorris
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  11. add new function file

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  12. [Jenkins] auto-formatting by clang-format version 10.0.0-4ubuntu1

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Commits on Aug 1, 2024

  1. unit tests passing

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  2. Merge branch 'feature/3299-improve-ESS-MCSE' of https://github.com/st… 

    …an-dev/stan into feature/3299-improve-ESS-MCSE
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  3. [Jenkins] auto-formatting by clang-format version 10.0.0-4ubuntu1

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Commits on Aug 2, 2024

  1. checkpointing, added quantiles, mean, sd, mad, need unit tests

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  2. Merge branch 'feature/3299-improve-ESS-MCSE' of https://github.com/st… 

    …an-dev/stan into feature/3299-improve-ESS-MCSE
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  3. [Jenkins] auto-formatting by clang-format version 10.0.0-4ubuntu1

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  4. checkpointing

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  5. merge fix

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  6. [Jenkins] auto-formatting by clang-format version 10.0.0-4ubuntu1

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  7. more unit tests

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  8. merge fix

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  9. [Jenkins] auto-formatting by clang-format version 10.0.0-4ubuntu1

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  10. minimal unit tests in place

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  11. Merge branch 'feature/3299-improve-ESS-MCSE' of https://github.com/st… 

    …an-dev/stan into feature/3299-improve-ESS-MCSE
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  12. [Jenkins] auto-formatting by clang-format version 10.0.0-4ubuntu1

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  13. Merge branch 'feature/3299-improve-ESS-MCSE' of https://github.com/st… 

    …an-dev/stan into feature/3299-improve-ESS-MCSE
    @mitzimorris
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  14. header fix

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  15. remove old tests

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  16. [Jenkins] auto-formatting by clang-format version 10.0.0-4ubuntu1

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  17. revert old compute ess code

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  18. Merge branch 'feature/3299-improve-ESS-MCSE' of https://github.com/st… 

    …an-dev/stan into feature/3299-improve-ESS-MCSE
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  19. fix stan_csv_reader logic

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  20. parse metadata, check for string true for bool values

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  21. [Jenkins] auto-formatting by clang-format version 10.0.0-4ubuntu1

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Commits on Aug 3, 2024

  1. commented all chainset methods

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  2. Merge branch 'feature/3299-improve-ESS-MCSE' of https://github.com/st… 

    …an-dev/stan into feature/3299-improve-ESS-MCSE
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  3. [Jenkins] auto-formatting by clang-format version 10.0.0-4ubuntu1

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  4. Merge branch 'feature/3299-improve-ESS-MCSE' of https://github.com/st… 

    …an-dev/stan into feature/3299-improve-ESS-MCSE
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  5. test throws

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  6. more unit tests

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  7. [Jenkins] auto-formatting by clang-format version 10.0.0-4ubuntu1

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Commits on Aug 4, 2024

  1. fix cut-paste error in doc comments

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  2. Merge branch 'feature/3299-improve-ESS-MCSE' of https://github.com/st… 

    …an-dev/stan into feature/3299-improve-ESS-MCSE
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  3. merge fix

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  4. stan_csv_reader - logic to parse fixed_param output

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  5. [Jenkins] auto-formatting by clang-format version 10.0.0-4ubuntu1

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  6. Merge branch 'feature/3299-improve-ESS-MCSE' of https://github.com/st… 

    …an-dev/stan into feature/3299-improve-ESS-MCSE
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  7. Merge branch 'feature/3299-improve-ESS-MCSE' of https://github.com/st… 

    …an-dev/stan into feature/3299-improve-ESS-MCSE
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  8. stan_csv_reader - doc comments

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Commits on Aug 5, 2024

  1. adding autocovariance function, used by stansummary

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  2. [Jenkins] auto-formatting by clang-format version 10.0.0-4ubuntu1

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  3. Merge branch 'feature/3299-improve-ESS-MCSE' of https://github.com/st… 

    …an-dev/stan into feature/3299-improve-ESS-MCSE
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  4. Merge branch 'feature/3299-improve-ESS-MCSE' of https://github.com/st… 

    …an-dev/stan into feature/3299-improve-ESS-MCSE
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Commits on Sep 23, 2024

  1. remove empty template parameter for chainset obj

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  2. Merge branch 'feature/3299-improve-ESS-MCSE' of https://github.com/st… 

    …an-dev/stan into feature/3299-improve-ESS-MCSE
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Commits on Sep 24, 2024

  1. stan_math fix?

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  2. Merge branch 'develop' of https://github.com/stan-dev/stan into featu… 

    …re/3299-improve-ESS-MCSE
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  3. changes per code review

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Commits on Sep 25, 2024

  1. Merge branch 'feature/3299-improve-ESS-MCSE' of https://github.com/st… 

    …an-dev/stan into feature/3299-improve-ESS-MCSE
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  2. harmonize get_stats from chainset and parsing of csv files

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  3. [Jenkins] auto-formatting by clang-format version 10.0.0-4ubuntu1

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  4. Merge branch 'feature/3299-improve-ESS-MCSE' of https://github.com/st… 

    …an-dev/stan into feature/3299-improve-ESS-MCSE
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  5. unit test fix

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Commits on Sep 26, 2024

  1. changes per code review

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  2. [Jenkins] auto-formatting by clang-format version 10.0.0-4ubuntu1

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