[Stan 2.33] Pathfinder #882
Workflow file for this run
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name: CmdStanPy | |
on: | |
push: | |
branches: | |
- 'develop' | |
- 'master' | |
tags: | |
- '**' | |
pull_request: | |
workflow_dispatch: | |
inputs: | |
cmdstan-version: | |
description: 'Version to test' | |
required: false | |
default: '' | |
# only run one copy per PR | |
concurrency: | |
group: ${{ github.workflow }}-${{ github.head_ref || github.run_id }} | |
cancel-in-progress: true | |
jobs: | |
get-cmdstan-version: | |
# get the latest cmdstan version to use as part of the cache key | |
name: grab version | |
runs-on: ubuntu-latest | |
steps: | |
- name: Get CmdStan version | |
id: check-cmdstan | |
run: | | |
if [[ "${{ github.event.inputs.cmdstan-version }}" != "" ]]; then | |
echo "version=${{ github.event.inputs.cmdstan-version }}" >> $GITHUB_OUTPUT | |
else | |
echo "version=2.33.0-rc1" >> $GITHUB_OUTPUT | |
# python -c 'import requests;print("version="+requests.get("https://api.github.com/repos/stan-dev/cmdstan/releases/latest").json()["tag_name"][1:])' >> $GITHUB_OUTPUT | |
fi | |
outputs: | |
version: ${{ steps.check-cmdstan.outputs.version }} | |
cmdstanpy: | |
needs: get-cmdstan-version | |
name: tests | |
runs-on: ${{ matrix.os }} | |
strategy: | |
matrix: | |
os: [ubuntu-latest, macos-latest, windows-latest] | |
python-version: ["3.8", "3.9", "3.10", "3.11"] | |
env: | |
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
steps: | |
- name: Check out github | |
uses: actions/checkout@v3 | |
- name: Set up Python ${{ matrix.python-version }} | |
uses: actions/setup-python@v4 | |
with: | |
python-version: ${{ matrix.python-version }} | |
- name: Install dependencies (python) | |
run: | | |
python -m pip install --upgrade pip wheel | |
pip install -r requirements.txt | |
pip install -r requirements-test.txt | |
pip install codecov | |
- name: Run flake8, pylint, mypy | |
if: matrix.python-version == '3.11' | |
run: | | |
flake8 cmdstanpy test | |
pylint -v cmdstanpy test | |
mypy cmdstanpy | |
- name: Build wheel | |
run: python setup.py bdist_wheel | |
- name: Install wheel (Linux, macOS) | |
if: matrix.os != 'windows-latest' | |
run: pip install dist/*.whl | |
- name: Install wheel (Windows) | |
if: matrix.os == 'windows-latest' | |
run: | | |
$whl = Get-ChildItem -Path dist -Filter *.whl | Select-Object -First 1 | |
pip install "$whl" | |
- name: Show libraries | |
run: python -m pip freeze | |
- name: CmdStan installation cacheing | |
if: ${{ !startswith(needs.get-cmdstan-version.outputs.version, 'git:') }} | |
uses: actions/cache@v3 | |
with: | |
path: ~/.cmdstan | |
key: ${{ runner.os }}-cmdstan-${{ needs.get-cmdstan-version.outputs.version }}-${{ hashFiles('**/install_cmdstan.py') }} | |
- name: Install CmdStan (Linux, macOS) | |
if: matrix.os != 'windows-latest' | |
run: | | |
install_cmdstan -h | |
install_cxx_toolchain -h | |
python -c "import cmdstanpy; cmdstanpy.install_cmdstan(version='${{ needs.get-cmdstan-version.outputs.version }}', cores=2)" | |
- name: Install CmdStan (Windows) | |
if: matrix.os == 'windows-latest' | |
run: | | |
install_cmdstan -h | |
install_cxx_toolchain -h | |
python -m cmdstanpy.install_cmdstan --compiler --version ${{ needs.get-cmdstan-version.outputs.version }} --cores 2 | |
- name: Run tests | |
run: | | |
mkdir run_tests | |
cd run_tests | |
pytest -v ../test --cov=../cmdstanpy | |
- name: Run model with requirements-optional.txt | |
run: | | |
cd run_tests | |
python -m pip install -r ../requirements-optional.txt | |
python ../test/example_script.py | |
- name: Submit codecov | |
run: | | |
cd run_tests | |
codecov |