Add --resolve-only option #37
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When the option is provided, only the workspace is created and the location is printed to the command line. This can then be used, for example, as classpath for another tool. ```shell $ jgo --resolve-only org.scijava:parsington /home/hanslovskyp/.jgo/org/scijava/parsington/RELEASE $ ls /home/hanslovskyp/.jgo/org/scijava/parsington/RELEASE mainClass parsington-1.0.4.jar pom.xml ``` This is experimental (for now) but might be merged at some point in the future
hanslovsky
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Oct 23, 2019
Needs - mvn on classpath - jgo from [resolve-only](scijava/jgo#37) pull request (Python >= 3.7) Currently fails with: ``` Unable to convert into Paintera dataset: Job aborted due to stage failure: Task 1 in stage 0.0 failed 4 times, most recent failure: Lost task 1.3 in stage 0.0 (TID 736, 10.36.110.15, executor 69): java.lang.NoSuchMethodError: org.apache.commons.compress.compressors.gzip.GzipCompressorOutputStream.<init>(Ljava/io/Ou at org.janelia.saalfeldlab.n5.GzipCompression.getOutputStream(GzipCompression.java:89) at org.janelia.saalfeldlab.n5.DefaultBlockWriter.write(DefaultBlockWriter.java:49) at org.janelia.saalfeldlab.n5.DefaultBlockWriter.writeBlock(DefaultBlockWriter.java:83) at org.janelia.saalfeldlab.n5.N5FSWriter.writeBlock(N5FSWriter.java:133) at org.janelia.saalfeldlab.n5.imglib2.N5LabelMultisets.saveLabelMultisetBlock(N5LabelMultisets.java:308) at org.janelia.saalfeldlab.n5.imglib2.N5LabelMultisets.saveLabelMultisetBlock(N5LabelMultisets.java:337) at org.janelia.saalfeldlab.label.spark.convert.ConvertToLabelMultisetType.lambda$convertToLabelMultisetType$dce05d2$1(ConvertToLabelMultisetType.java:226) at org.apache.spark.api.java.JavaPairRDD$$anonfun$toScalaFunction$1.apply(JavaPairRDD.scala:1040) at scala.collection.Iterator$$anon$11.next(Iterator.scala:409) at scala.collection.Iterator$class.foreach(Iterator.scala:893) at scala.collection.AbstractIterator.foreach(Iterator.scala:1336) at scala.collection.TraversableOnce$class.reduceLeft(TraversableOnce.scala:185) at scala.collection.AbstractIterator.reduceLeft(Iterator.scala:1336) at org.apache.spark.rdd.RDD$$anonfun$reduce$1$$anonfun$14.apply(RDD.scala:1015) at org.apache.spark.rdd.RDD$$anonfun$reduce$1$$anonfun$14.apply(RDD.scala:1013) at org.apache.spark.SparkContext$$anonfun$33.apply(SparkContext.scala:2130) at org.apache.spark.SparkContext$$anonfun$33.apply(SparkContext.scala:2130) at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:87) at org.apache.spark.scheduler.Task.run(Task.scala:109) at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:345) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617) at java.lang.Thread.run(Thread.java:745) ``` Probably dependency issue between spark and N5 (or other libraries) that is not an issue with shaded fat jar.
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When the option is provided, only the workspace is created and the location is printed to the command line. This can then be used, for example, as classpath for another tool.
This is experimental (for now) but might be merged at some point in the future