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Recommend 1bp SEQ with QUAL="*" as quality-unavailable. #752

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Recommend 1bp SEQ with QUAL="*" as quality-unavailable. #752

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Commits on Jan 29, 2024

  1. Trivial: change type of non-breaking space in SAM spec. 

    The use of \textsc{cr\>lf} breaks pdfTeX 3.14159265-2.6-1.40.18.
Switching to \textsc{cr\,lf} cures it.  Visually they're almost
identical and it's only a footnote anyway.
    @jkbonfield
    jkbonfield committed Jan 29, 2024
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  2. Document SAM ambiguity of 1bp long seq with QUAL "*". 

    "*" is either QUAL 9, or QUAL unavailable.  Made a recommendation in
a footnote, mainly as an indication that the ambiguity exists.  In
practice it's vanishingly unlikely to matter.

Fixes samtools#715
    @jkbonfield
    jkbonfield committed Jan 29, 2024
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