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1.3.0
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saigegit committed Sep 9, 2023
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25 changes: 24 additions & 1 deletion docs/Installation.md
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Expand Up @@ -25,8 +25,31 @@ How to install and run SAIGE and SAIGE-GENE
### Logs:


## v1.1.9 (Updated on May 11, 2023)
## v1.3.0 (Updated on Sept 09, 2023)

Bug fixed:

fix the bug that causes overestimation of SE for markers when SPA is applied. This bug was introduced since v1.1.6 when the function R::qnorm is used due to the logp argument.

To correct the SE estimation without re-run the association tests with v1.3.0, please use the following R to re-estimate the SE for markers with SPA applied

```
SE = abs(BETA/qnorm(p.value/2))
```

## v1.2.0 (Updated on Jun 12, 2023)

Merge pull request #90 from belowlab/vectors-for-safer-memory

Update ComputeExact to use vectors rather than raw memory where easy

When PLINK files are used as input, marker IDs in the group file must match the ID column in PLINK files

Bug fixed:

fix the bug that rewrite the list of marker IDs when the first chunk is empty

## v1.1.9 (Updated on May 11, 2023)

Merge pull request #90 from belowlab/vectors-for-safer-memory

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2 changes: 1 addition & 1 deletion docs/Installation_docker.md
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Expand Up @@ -16,7 +16,7 @@ Thanks to Juha Karjalainen for sharing the Dockerfile.
* The docker image can be pulled

```
docker pull wzhou88/saige:1.1.9
docker pull wzhou88/saige:1.3.0
```

Functions can be called
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