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udpate revdep checks info
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sckott committed Jul 11, 2017
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43 changes: 14 additions & 29 deletions revdep/README.md
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|setting |value |
|:--------|:-------------------------------------------|
|version |R version 3.4.0 Patched (2017-06-05 r72770) |
|version |R version 3.4.1 Patched (2017-07-04 r72893) |
|system |x86_64, darwin15.6.0 |
|ui |RStudio (1.0.143) |
|language |(EN) |
|collate |en_US.UTF-8 |
|tz |America/Vancouver |
|date |2017-06-29 |
|date |2017-07-11 |

## Packages

|package |* |version |date |source |
|:-------|:--|:----------|:----------|:--------------------------|
|taxize | |0.8.7.9881 |2017-06-29 |local (ropensci/taxize@NA) |
|package |* |version |date |source |
|:-------|:--|:-------|:----------|:--------------------------|
|taxize | |0.8.9 |2017-07-11 |local (ropensci/taxize@NA) |

# Check results

Expand All @@ -32,7 +32,7 @@
|mapr |0.3.4 | 0| 0| 0|
|metacoder |0.1.3 | 0| 0| 0|
|MonoPhy |1.2 | 0| 0| 0|
|myTAI |0.5.0 | 1| 0| 0|
|myTAI |0.6.0 | 0| 0| 1|
|originr |0.2.0 | 0| 0| 0|
|rbison |0.5.4 | 0| 0| 0|
|RNeXML |2.0.7 | 0| 0| 1|
Expand Down Expand Up @@ -87,32 +87,18 @@ Maintainer: Orlando Schwery <[email protected]>

0 errors | 0 warnings | 0 notes

## myTAI (0.5.0)
## myTAI (0.6.0)
Maintainer: Hajk-Georg Drost <[email protected]>
Bug reports: https://github.com/HajkD/myTAI/issues

1 error | 0 warnings | 0 notes
0 errors | 0 warnings | 1 note

```
checking tests ... ERROR
Running ‘testthat.R’ [58s/68s]
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
`summarise_each()` is deprecated.
Use `summarise_all()`, `summarise_at()` or `summarise_if()` instead.
To map `funs` over all variables, use `summarise_all()`
`summarise_each()` is deprecated.
Use `summarise_all()`, `summarise_at()` or `summarise_if()` instead.
To map `funs` over all variables, use `summarise_all()`
testthat results ================================================================
OK: 178 SKIPPED: 1 FAILED: 2
1. Failure: PlotContribution() works properly with PhyloExpressionSet input... (@test-PlotContribution.R#11)
2. Failure: PlotContribution() works properly with DivergenceExpressionSet input... (@test-PlotContribution.R#16)
Error: testthat unit tests failed
Execution halted
checking installed package size ... NOTE
installed size is 5.1Mb
sub-directories of 1Mb or more:
data 2.0Mb
doc 2.7Mb
```

## originr (0.2.0)
Expand All @@ -135,8 +121,7 @@ Bug reports: https://github.com/ropensci/RNeXML/issues

```
checking package dependencies ... NOTE
Packages suggested but not available for checking:
‘rrdf’ ‘rfigshare’ ‘knitcitations’ ‘phylobase’ ‘Sxslt’
Packages suggested but not available for checking: ‘rrdf’ ‘Sxslt’
```

## rnoaa (0.7.0)
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Binary file modified revdep/checks.rds
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47 changes: 9 additions & 38 deletions revdep/problems.md
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Expand Up @@ -4,53 +4,24 @@

|setting |value |
|:--------|:-------------------------------------------|
|version |R version 3.4.0 Patched (2017-06-05 r72770) |
|version |R version 3.4.1 Patched (2017-07-04 r72893) |
|system |x86_64, darwin15.6.0 |
|ui |RStudio (1.0.143) |
|language |(EN) |
|collate |en_US.UTF-8 |
|tz |America/Vancouver |
|date |2017-06-29 |
|date |2017-07-11 |

## Packages

|package |* |version |date |source |
|:-------|:--|:----------|:----------|:--------------------------|
|taxize | |0.8.7.9881 |2017-06-29 |local (ropensci/taxize@NA) |
|package |* |version |date |source |
|:-------|:--|:-------|:----------|:--------------------------|
|taxize | |0.8.9 |2017-07-11 |local (ropensci/taxize@NA) |

# Check results

1 packages with problems

|package |version | errors| warnings| notes|
|:-------|:-------|------:|--------:|-----:|
|myTAI |0.5.0 | 1| 0| 0|

## myTAI (0.5.0)
Maintainer: Hajk-Georg Drost <[email protected]>
Bug reports: https://github.com/HajkD/myTAI/issues

1 error | 0 warnings | 0 notes

```
checking tests ... ERROR
Running ‘testthat.R’ [58s/68s]
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
`summarise_each()` is deprecated.
Use `summarise_all()`, `summarise_at()` or `summarise_if()` instead.
To map `funs` over all variables, use `summarise_all()`
`summarise_each()` is deprecated.
Use `summarise_all()`, `summarise_at()` or `summarise_if()` instead.
To map `funs` over all variables, use `summarise_all()`
testthat results ================================================================
OK: 178 SKIPPED: 1 FAILED: 2
1. Failure: PlotContribution() works properly with PhyloExpressionSet input... (@test-PlotContribution.R#11)
2. Failure: PlotContribution() works properly with DivergenceExpressionSet input... (@test-PlotContribution.R#16)
Error: testthat unit tests failed
Execution halted
```
0 packages with problems




36 changes: 18 additions & 18 deletions revdep/timing.md
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Expand Up @@ -2,23 +2,23 @@

| |package |version | check_time|
|:--|:----------|:-------|----------:|
|12 |RNeXML |2.0.7 | 331.8|
|1 |aptg |0.1.0 | 294.8|
|9 |myTAI |0.5.0 | 257.7|
|5 |camtrapR |0.99.8 | 169.7|
|7 |metacoder |0.1.3 | 166.6|
|8 |MonoPhy |1.2 | 107.7|
|17 |TR8 |0.9.16 | 74.6|
|6 |mapr |0.3.4 | 70.6|
|4 |brranching |0.2.0 | 57.1|
|2 |bdvis |0.2.15 | 54.9|
|15 |spocc |0.7.0 | 50.4|
|13 |rnoaa |0.7.0 | 49|
|11 |rbison |0.5.4 | 41.6|
|18 |traits |0.2.0 | 40.1|
|3 |binomen |0.1.2 | 37.8|
|16 |taxlist |0.1.0 | 34.4|
|10 |originr |0.2.0 | 31.4|
|14 |rusda |1.0.8 | 30.3|
|12 |RNeXML |2.0.7 | 420.4|
|9 |myTAI |0.6.0 | 338.6|
|5 |camtrapR |0.99.8 | 259.7|
|7 |metacoder |0.1.3 | 237.6|
|1 |aptg |0.1.0 | 152.3|
|8 |MonoPhy |1.2 | 140.3|
|6 |mapr |0.3.4 | 110.6|
|17 |TR8 |0.9.16 | 100.4|
|4 |brranching |0.2.0 | 95.5|
|2 |bdvis |0.2.15 | 72.4|
|13 |rnoaa |0.7.0 | 66.8|
|18 |traits |0.2.0 | 54.2|
|3 |binomen |0.1.2 | 53.6|
|15 |spocc |0.7.0 | 53.5|
|16 |taxlist |0.1.0 | 50.4|
|11 |rbison |0.5.4 | 44.4|
|10 |originr |0.2.0 | 44.1|
|14 |rusda |1.0.8 | 40.1|


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