udpate revdep checks info

ropensci · Jul 11, 2017 · 0f4f331 · 0f4f331
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diff --git a/revdep/README.md b/revdep/README.md
@@ -4,19 +4,19 @@
 
 |setting  |value                                       |
 |:--------|:-------------------------------------------|
-|version  |R version 3.4.0 Patched (2017-06-05 r72770) |
+|version  |R version 3.4.1 Patched (2017-07-04 r72893) |
 |system   |x86_64, darwin15.6.0                        |
 |ui       |RStudio (1.0.143)                           |
 |language |(EN)                                        |
 |collate  |en_US.UTF-8                                 |
 |tz       |America/Vancouver                           |
-|date     |2017-06-29                                  |
+|date     |2017-07-11                                  |
 
 ## Packages
 
-|package |*  |version    |date       |source                     |
-|:-------|:--|:----------|:----------|:--------------------------|
-|taxize  |   |0.8.7.9881 |2017-06-29 |local (ropensci/taxize@NA) |
+|package |*  |version |date       |source                     |
+|:-------|:--|:-------|:----------|:--------------------------|
+|taxize  |   |0.8.9   |2017-07-11 |local (ropensci/taxize@NA) |
 
 # Check results
 
@@ -32,7 +32,7 @@
 |mapr       |0.3.4   |      0|        0|     0|
 |metacoder  |0.1.3   |      0|        0|     0|
 |MonoPhy    |1.2     |      0|        0|     0|
-|myTAI      |0.5.0   |      1|        0|     0|
+|myTAI      |0.6.0   |      0|        0|     1|
 |originr    |0.2.0   |      0|        0|     0|
 |rbison     |0.5.4   |      0|        0|     0|
 |RNeXML     |2.0.7   |      0|        0|     1|
@@ -87,32 +87,18 @@ Maintainer: Orlando Schwery <[email protected]>
 
 0 errors | 0 warnings | 0 notes
 
-## myTAI (0.5.0)
+## myTAI (0.6.0)
 Maintainer: Hajk-Georg Drost <[email protected]>  
 Bug reports: https://github.com/HajkD/myTAI/issues
 
-1 error  | 0 warnings | 0 notes
+0 errors | 0 warnings | 1 note 
 
 ```
-checking tests ... ERROR
-  Running ‘testthat.R’ [58s/68s]
-Running the tests in ‘tests/testthat.R’ failed.
-Last 13 lines of output:
-  
-  
-  `summarise_each()` is deprecated.
-  Use `summarise_all()`, `summarise_at()` or `summarise_if()` instead.
-  To map `funs` over all variables, use `summarise_all()`
-  `summarise_each()` is deprecated.
-  Use `summarise_all()`, `summarise_at()` or `summarise_if()` instead.
-  To map `funs` over all variables, use `summarise_all()`
-  testthat results ================================================================
-  OK: 178 SKIPPED: 1 FAILED: 2
-  1. Failure: PlotContribution() works properly with PhyloExpressionSet input... (@test-PlotContribution.R#11) 
-  2. Failure: PlotContribution() works properly with DivergenceExpressionSet input... (@test-PlotContribution.R#16) 
-  
-  Error: testthat unit tests failed
-  Execution halted
+checking installed package size ... NOTE
+  installed size is  5.1Mb
+  sub-directories of 1Mb or more:
+    data   2.0Mb
+    doc    2.7Mb
 ```
 
 ## originr (0.2.0)
@@ -135,8 +121,7 @@ Bug reports: https://github.com/ropensci/RNeXML/issues
 
 ```
 checking package dependencies ... NOTE
-Packages suggested but not available for checking:
-  ‘rrdf’ ‘rfigshare’ ‘knitcitations’ ‘phylobase’ ‘Sxslt’
+Packages suggested but not available for checking: ‘rrdf’ ‘Sxslt’
 ```
 
 ## rnoaa (0.7.0)

diff --git a/revdep/checks.rds b/revdep/checks.rds
diff --git a/revdep/problems.md b/revdep/problems.md
@@ -4,53 +4,24 @@
 
 |setting  |value                                       |
 |:--------|:-------------------------------------------|
-|version  |R version 3.4.0 Patched (2017-06-05 r72770) |
+|version  |R version 3.4.1 Patched (2017-07-04 r72893) |
 |system   |x86_64, darwin15.6.0                        |
 |ui       |RStudio (1.0.143)                           |
 |language |(EN)                                        |
 |collate  |en_US.UTF-8                                 |
 |tz       |America/Vancouver                           |
-|date     |2017-06-29                                  |
+|date     |2017-07-11                                  |
 
 ## Packages
 
-|package |*  |version    |date       |source                     |
-|:-------|:--|:----------|:----------|:--------------------------|
-|taxize  |   |0.8.7.9881 |2017-06-29 |local (ropensci/taxize@NA) |
+|package |*  |version |date       |source                     |
+|:-------|:--|:-------|:----------|:--------------------------|
+|taxize  |   |0.8.9   |2017-07-11 |local (ropensci/taxize@NA) |
 
 # Check results
 
-1 packages with problems
-
-|package |version | errors| warnings| notes|
-|:-------|:-------|------:|--------:|-----:|
-|myTAI   |0.5.0   |      1|        0|     0|
-
-## myTAI (0.5.0)
-Maintainer: Hajk-Georg Drost <[email protected]>  
-Bug reports: https://github.com/HajkD/myTAI/issues
-
-1 error  | 0 warnings | 0 notes
-
-```
-checking tests ... ERROR
-  Running ‘testthat.R’ [58s/68s]
-Running the tests in ‘tests/testthat.R’ failed.
-Last 13 lines of output:
-  
-  
-  `summarise_each()` is deprecated.
-  Use `summarise_all()`, `summarise_at()` or `summarise_if()` instead.
-  To map `funs` over all variables, use `summarise_all()`
-  `summarise_each()` is deprecated.
-  Use `summarise_all()`, `summarise_at()` or `summarise_if()` instead.
-  To map `funs` over all variables, use `summarise_all()`
-  testthat results ================================================================
-  OK: 178 SKIPPED: 1 FAILED: 2
-  1. Failure: PlotContribution() works properly with PhyloExpressionSet input... (@test-PlotContribution.R#11) 
-  2. Failure: PlotContribution() works properly with DivergenceExpressionSet input... (@test-PlotContribution.R#16) 
-  
-  Error: testthat unit tests failed
-  Execution halted
-```
+0 packages with problems
+
+
+
 
diff --git a/revdep/timing.md b/revdep/timing.md
@@ -2,23 +2,23 @@
 
 |   |package    |version | check_time|
 |:--|:----------|:-------|----------:|
-|12 |RNeXML     |2.0.7   |      331.8|
-|1  |aptg       |0.1.0   |      294.8|
-|9  |myTAI      |0.5.0   |      257.7|
-|5  |camtrapR   |0.99.8  |      169.7|
-|7  |metacoder  |0.1.3   |      166.6|
-|8  |MonoPhy    |1.2     |      107.7|
-|17 |TR8        |0.9.16  |       74.6|
-|6  |mapr       |0.3.4   |       70.6|
-|4  |brranching |0.2.0   |       57.1|
-|2  |bdvis      |0.2.15  |       54.9|
-|15 |spocc      |0.7.0   |       50.4|
-|13 |rnoaa      |0.7.0   |         49|
-|11 |rbison     |0.5.4   |       41.6|
-|18 |traits     |0.2.0   |       40.1|
-|3  |binomen    |0.1.2   |       37.8|
-|16 |taxlist    |0.1.0   |       34.4|
-|10 |originr    |0.2.0   |       31.4|
-|14 |rusda      |1.0.8   |       30.3|
+|12 |RNeXML     |2.0.7   |      420.4|
+|9  |myTAI      |0.6.0   |      338.6|
+|5  |camtrapR   |0.99.8  |      259.7|
+|7  |metacoder  |0.1.3   |      237.6|
+|1  |aptg       |0.1.0   |      152.3|
+|8  |MonoPhy    |1.2     |      140.3|
+|6  |mapr       |0.3.4   |      110.6|
+|17 |TR8        |0.9.16  |      100.4|
+|4  |brranching |0.2.0   |       95.5|
+|2  |bdvis      |0.2.15  |       72.4|
+|13 |rnoaa      |0.7.0   |       66.8|
+|18 |traits     |0.2.0   |       54.2|
+|3  |binomen    |0.1.2   |       53.6|
+|15 |spocc      |0.7.0   |       53.5|
+|16 |taxlist    |0.1.0   |       50.4|
+|11 |rbison     |0.5.4   |       44.4|
+|10 |originr    |0.2.0   |       44.1|
+|14 |rusda      |1.0.8   |       40.1|