- New modules:
gget enrichr
now also supports species other than human and mouse (fly, yeast, worm, and fish) via modEnrichR
gget mutate
:
gget mutate
will now merge identical sequences in the final file by default. Mutation creation was vectorized to decrease runtime. Improved flanking sequence check for non-substitution mutations to make sure no wildtype kmer is retained in the mutation-containing sequence. Addition of several new arguments to customize sequence generation and output.
gget cosmic
:
Added support for targeted as well as gene screens. The CSV file created for gget mutate now also contains protein mutation info.
gget ref
:
Added out file option.
gget info
and gget seq
:
Switched to Ensembl POST API to increase speed (nothing changes in front end).
- Other "behind the scenes" changes:
fixes #157
fixes #121
fixes #144
fixes #140
fixes #103