I'm not crying you're crying

pachterlab · Sep 25, 2024 · c595e0b · c595e0b
1 parent 50bb760
commit c595e0b
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Showing 3 changed files with 18 additions and 22 deletions.
diff --git a/gget/gget_enrichr.py b/gget/gget_enrichr.py
@@ -377,18 +377,10 @@ def enrichr(
                 If the input genes are Ensembl IDs, please set argument 'ensembl=True'. (For command-line, add flag [-e][--ensembl].)\n
                 """
             )
-
-    # print(r2.headers.get('Content-Type'))
-    # if r2.content:
-    #     data = r2.json()
-    # else:
-    #     print("Empty response")
-    # print(r2.text)
 
     # Replace inf values with "inf" string
-    response_text = r2.text.replace('Infinity', '"inf"')
+    response_text = r2.text.replace("Infinity", '"inf"')
     enrichr_results = json_package.loads(response_text)
-    # enrichr_results = r2.json()
 
     ## Build data frame (standard return)
     # Define column names

diff --git a/tests/fixtures/test_blast.json b/tests/fixtures/test_blast.json
@@ -28,17 +28,21 @@
             "limit": 1,
             "json": true
         },
-        "expected_result": [{"Description": "Homo sapiens ATAC-STARR-seq lymphoblastoid active region 16974 (LOC129935398) on chromosome 2",
-  "Scientific Name": "Homo sapiens",
-  "Common Name": "human",
-  "Taxid": 9606,
-  "Max Score": 222,
-  "Total Score": 222,
-  "Query Cover": "100%",
-  "E value": 6e-54,
-  "Per. Ident": "100.00%",
-  "Acc. Len": 460,
-  "Accession": "NG_168413.1"}]
+        "expected_result": [
+            {
+                "Description": "Homo sapiens ATAC-STARR-seq lymphoblastoid active region 16974 (LOC129935398) on chromosome 2",
+                "Scientific Name": "Homo sapiens",
+                "Common Name": "human",
+                "Taxid": 9606,
+                "Max Score": 222,
+                "Total Score": 222,
+                "Query Cover": "100%",
+                "E value": 6e-54,
+                "Per. Ident": "100.00%",
+                "Acc. Len": 460,
+                "Accession": "NG_168413.1"
+            }
+        ]
     },
     "test_blast_bad_seq": {
         "type": "error",
@@ -91,4 +95,4 @@
         },
         "expected_result": "ValueError"
     }
-}
+}
diff --git a/tests/fixtures/test_enrichr.json b/tests/fixtures/test_enrichr.json
@@ -6306,4 +6306,4 @@
             ]
         ]
     }
-}
+}