Repositories list

• Snowflake

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Sep 6, 2024Sep 6, 2024

• GSR-PPI

  Public
  Graph-based spatial proximity of super-resolved protein-protein interactions predict cancer drug responses in single cells

  0•0•0•0•Updated Aug 12, 2024Aug 12, 2024

• 3D-co-culture-of-murine-T-cells-and-lung-cancer-cells

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Jun 17, 2024Jun 17, 2024

• 3D-spaGNN-E

  Public
  Code for manuscript titled: Graph-based 3D spatial gene neighborhood networks in gel-embedded single cells

  Jupyter Notebook

  •0•0•0•0•Updated Jun 11, 2024Jun 11, 2024

• iseqPLA

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Jun 9, 2024Jun 9, 2024

• pSigOmics

  Public
  NFkB pSigOmics

  Jupyter Notebook

  •

  MIT License

  •0•0•0•0•Updated May 26, 2024May 26, 2024

• M.E.D.V.I.S-Algorithm

  Public
  This repository houses all of the scripts and files used to run and test the M.E.D.V.I.S Alogirthm

  Jupyter Notebook

  •0•0•0•0•Updated Mar 27, 2024Mar 27, 2024

• scSpaMet

  Public
  Jupyter Notebook

  •1•8•0•0•Updated Sep 29, 2023Sep 29, 2023

• SpatialVizPheno

  Public
  Spatial Immunophenotyping using Multiplexed Imaging of Immune Follicles in Secondary Lymphoid Tissues

  Jupyter Notebook

  •0•0•0•0•Updated Aug 31, 2023Aug 31, 2023

• spPPI-GCN

  Public
  0•0•0•0•Updated Jul 8, 2023Jul 8, 2023

• spaGNN

  Public
  Code for "Subcellular spatially resolved gene neighborhood network"

  Jupyter Notebook

  •0•1•0•0•Updated May 24, 2023May 24, 2023

• Spatial-organelle-networks

  Public
  Data and code for "Spatial subcellular organelle networks in single cells"

  Jupyter Notebook

  •2•0•0•0•Updated Apr 1, 2023Apr 1, 2023

• SpatialViz

  Public
  Code for "Spatially visualized single-cell pathology of highly multiplexed protein profiles in health and disease"

  Jupyter Notebook

  •2•4•0•0•Updated Jul 21, 2022Jul 21, 2022

• SpatialVizScore

  Public
  Jupyter Notebook

  •1•3•0•0•Updated May 23, 2022May 23, 2022

• Spatial-signaling

  Public
  Jupyter Notebook

  •0•0•0•0•Updated May 20, 2022May 20, 2022

• Subcellular-3D-spatially-resolved-transcriptional-density-and-function-of-single-stem-cells

  Public
  Python

  •1•0•0•0•Updated Aug 27, 2021Aug 27, 2021

• Ion-Beam-Tomography

  Public
  Code for "Nanoscopic subcellular imaging enabled by Ion Beam Tomography"

  Jupyter Notebook

  •2•1•0•0•Updated Nov 17, 2020Nov 17, 2020

• Isotopically-Encoded-Nanotags

  Public
  Here regroup the code and data for the paper “Isotopically Encoded Nanotags for Multiplexed Ion Beam Imaging”

  Jupyter Notebook

  •0•0•0•0•Updated Jun 29, 2020Jun 29, 2020

• Spatially-resolved-3D-metabolomic-profiling

  Public
  The code for the paper “Spatially resolved 3D metabolomic profiling in tissues”.

  Jupyter Notebook

  •0•0•0•0•Updated Jun 29, 2020Jun 29, 2020