Fixes #2707 - Logical and textual defs acinar cell of sebaceous gland

[Caroline-99]

• Fixed the logical defintion
• Improved textual defs to align with the logical definition and provided references

[dosumis]

#gogoeditdiff

[github-actions]

Here's a diff of how these changes impact the classified ontology (on -simple file):

Ontology comparison

Left

• Ontology IRI: http://purl.obolibrary.org/obo/cl/cl-simple.owl
• Version IRI: http://purl.obolibrary.org/obo/cl/releases/2024-10-30/cl-simple.owl
• Loaded from: file:/__w/cell-ontology/cell-ontology/src/ontology/cl-simple-master.owl/cl-simple.owl

Right

• Ontology IRI: http://purl.obolibrary.org/obo/cl/cl-simple.owl
• Version IRI: http://purl.obolibrary.org/obo/cl/releases/2024-10-30/cl-simple.owl
• Loaded from: file:/__w/cell-ontology/cell-ontology/src/ontology/cl-simple-pr.owl/cl-simple.owl

Ontology imports

Ontology annotations

acinar cell of sebaceous gland http://purl.obolibrary.org/obo/CL_0002140

Removed

• acinar cell of sebaceous gland definition "A sebum secreting cell of the skin that secretes sebum into the hair follicles."

  • database_cross_reference "GOC:tfm"

• acinar cell of sebaceous gland SubClassOf epithelial cell of sweat gland

Added

• acinar cell of sebaceous gland definition "An acinar cell that is part of a skin sebaceous gland. This cell produces and secretes sebum into hair follicles."

  • database_cross_reference "GOC:tfm"

  • database_cross_reference "PMID:37205445"

• acinar cell of sebaceous gland SubClassOf epidermal cell

• acinar cell of sebaceous gland SubClassOf epithelial cell of skin gland

[github-actions]

Here's a diff of your edit file (unreasoned)

Ontology comparison

Left

• Ontology IRI: http://purl.obolibrary.org/obo/cl.owl
• Version IRI: None
• Loaded from: file:/__w/cell-ontology/cell-ontology/master/src/ontology/cl-edit.owl

Right

• Ontology IRI: http://purl.obolibrary.org/obo/cl.owl
• Version IRI: None
• Loaded from: file:/__w/cell-ontology/cell-ontology/branch/src/ontology/cl-edit.owl

Ontology imports

Ontology annotations

acinar cell of sebaceous gland http://purl.obolibrary.org/obo/CL_0002140

Removed

• acinar cell of sebaceous gland definition "A sebum secreting cell of the skin that secretes sebum into the hair follicles."

  • database_cross_reference "GOC:tfm"

• acinar cell of sebaceous gland EquivalentTo sebum secreting cell and (part of some skin sebaceous gland)

• acinar cell of sebaceous gland SubClassOf acinar cell

• acinar cell of sebaceous gland SubClassOf epithelial cell of sweat gland

Added

• acinar cell of sebaceous gland definition "An acinar cell that is part of a skin sebaceous gland. This cell produces and secretes sebum into hair follicles."

  • database_cross_reference "GOC:tfm"

  • database_cross_reference "PMID:37205445"

• acinar cell of sebaceous gland EquivalentTo acinar cell and (part of some skin sebaceous gland)

[dosumis]

Looks like link to sebum secretion is lost. Ideally we'd have a link to a GO sebum secretion term. In the absence of that we may need to manually classify under sebum secreting cell.

[Caroline-99]

Looks like link to sebum secretion is lost. Ideally we'd have a link to a GO sebum secretion term. In the absence of that we may need to manually classify under sebum secreting cell.

I agree. It is currently manually classified under sebum secreting cell.