This repository consists of scripts and workflows used for generating results, figures, and tables published in the article: Can Liu, Andrew J. Martins, William W. Lau, Nicholas Rachmaninoff, ..., John S. Tsang. "Time-resolved Systems Immunology Reveals a Late Juncture Linked to Fatal COVID-19". Cell (2021). https://doi.org/10.1016/j.cell.2021.02.018
Manuscript with supplemental figures can be downloaded here.
Please use the table in the Figures.Tables_Code_Key.pdf file to determine the code used for specific figures and tables. Refer to the README file in each main analysis folder for further details.
By using this software, you agree this software is to be used for research purposes only. Any presentation of data analysis using the software will acknowledge the software according to the guidelines below.
Primary author(s): Can Liu, Andrew J. Martins, William W. Lau, Nicholas Rachmaninoff
Organizational contact information: John Tsang (john.tsang AT nih.gov)
Date of release: Dec 5, 2020
Version: 1.0
License details: see LICENSE file
Description: scripts used to generate figures and tables in the above publication
Usage instructions: Refer to README files in the specific folders
A review of this code has been conducted, no critical errors exist, and to the best of the authors knowledge, there are no problematic file paths, no local system configuration details, and no passwords or keys included in this code. This open source software comes as is with absolutely no warranty.