Move to blazegraph

docker-compose.yml

@@ -15,14 +15,20 @@ services:
       - triplestore
       - upload-triplestore
     environment:
-      - SPARQL_ENDPOINT=http://triplestore:8080/rdf4j-server/repositories/sssom
+      - SPARQL_ENDPOINT=http://triplestore:8889/bigdata/sparql
   triplestore:
-    image: eclipse/rdf4j-workbench:latest
+    image: lyrasis/blazegraph:2.1.5
     environment:
-      - JAVA_OPTS=-Xms10g -Xmx20g
-      - RDF4J_DATA=/data 
+      - JVM_MEM=10g
     ports:
-      - 8080:8080
+      - 8889:8080
+    volumes:
+      - ./data:/data:ro
+    healthcheck:
+      test: ["CMD", "curl", "-f", "http://triplestore:8889/"]
+      interval: 3s
+      timeout: 5s
+      retries: 3
   upload-triplestore:
     build:
       context: .
@@ -32,6 +38,6 @@ services:
     links:
       - triplestore
     environment:
-      - SERVER=http://triplestore:8080
+      - SERVER=http://triplestore:8889
     volumes:
       - ./data:/data

process.sh

@@ -7,22 +7,22 @@ echo "Start: upload-triplestore"
 echo "TIME:"
 date
 
-SETUP=${WORKSPACE}/rdf4j_sssom.txt
-RDF4J=/opt/eclipse-rdf4j-${RDF4J_VERSION}
-RDF4JSERVER=${SERVER}/rdf4j-server
+# SETUP=${WORKSPACE}/rdf4j_sssom.txt
+#BLAZEGRAPH_UID=/opt/eclipse-rdf4j-${RDF4J_VERSION}
+BLAZEGRAPHSERVER=${SERVER}/
 DATA=/data/ols
 
 if [ `ls $DATA/*.jsonld.gz | wc -l` -lt 1 ]; then echo "ERROR: No data in data directory! Aborting.. " && exit 1; fi
 
-echo 'Waiting for RDF4J server..'
-until $(curl --output /dev/null --silent --head --fail ${RDF4JSERVER}); do
+echo 'Waiting for BLAZEGRAPH WORKBENCH..'
+until $(curl --output /dev/null --silent --head --fail ${BLAZEGRAPHSERVER}); do
     printf '.'
     sleep 5
 done
 
-echo "connect "${RDF4JSERVER}|cat - ${SETUP} > /tmp/out && mv /tmp/out ${SETUP}
-cat ${SETUP}
-cat ${SETUP} | sh ${RDF4J}/bin/console.sh
+# echo "connect "${RDF4JSERVER}|cat - ${SETUP} > /tmp/out && mv /tmp/out ${SETUP}
+# cat ${SETUP}
+# cat ${SETUP} | sh ${RDF4J}/bin/console.sh
 
 ls -lh $DATA
 

upload.Dockerfile

@@ -1,14 +1,14 @@
-FROM yyz1989/rdf4j:latest
+FROM lyrasis/blazegraph:2.1.5
 
 VOLUME /data
 
 ENV WORKSPACE=/opt/SSSOM
 WORKDIR /opt/SSSOM
 
-ENV BUILD_OUTPUT=${WORKSPACE}/build.out
+# ENV BUILD_OUTPUT=${WORKSPACE}/build.out
 
 COPY process.sh /opt/SSSOM/process.sh
-COPY rdf4j_sssom.txt /opt/SSSOM/rdf4j_sssom.txt
+# COPY rdf4j_sssom.txt /opt/SSSOM/rdf4j_sssom.txt
 
 RUN chmod +x /opt/SSSOM/*.sh