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Ropebwt3-3.8 (r249)

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@lh3 lh3 released this 18 Oct 15:38
· 2 commits to master since this release

Notable changes:

  • Improvement: a faster algorithm to locate a subset of positions in a suffix
    array interval. Given m highly similar genomes, the expected time is O(s/m)
    where s is the suffix array sample rate.

  • New feature: added option mem -p to optionally output a semi-random subset
    of SMEM positions.

  • New feature: added auxiliary script rb3tools.js for generating mappability
    filter and for simple SNP calling.

(3.8: 18 October 2024, r249)