Notable changes:
-
Improvement: a faster algorithm to locate a subset of positions in a suffix
array interval. Given m highly similar genomes, the expected time is O(s/m)
where s is the suffix array sample rate. -
New feature: added option
mem -p
to optionally output a semi-random subset
of SMEM positions. -
New feature: added auxiliary script
rb3tools.js
for generating mappability
filter and for simple SNP calling.
(3.8: 18 October 2024, r249)