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@labsyspharm

Laboratory of Systems Pharmacology @ Harvard

Reinventing the fundamental science underlying the development of new medicines and their use in individual patients.

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  1. ashlar ashlar Public

    ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration

    Python 126 42

  2. mcmicro mcmicro Public

    Multiple-choice microscopy pipeline

    Nextflow 107 58

  3. scimap scimap Public

    Spatial Single-Cell Analysis Toolkit

    Python 74 27

  4. minerva-story minerva-story Public

    Minerva Story is an image viewer that is designed specifically to make it easy for non-expert users to interact with complex tissue images.

    HTML 50 14

  5. minerva_analysis minerva_analysis Public

    JavaScript 25 6

  6. cylinter cylinter Public

    An Interactive Image Segmentation Filter for Multiplex Microscopy

    Python 22 11

Repositories

Showing 10 of 156 repositories
  • cylinter Public

    An Interactive Image Segmentation Filter for Multiplex Microscopy

    labsyspharm/cylinter’s past year of commit activity
    Python 22 MIT 11 0 1 Updated Oct 31, 2024
  • minerva-author-ui Public

    Minerva Author is an authoring tool used to create Minerva narrated stories via selection of specific channel groupings and image views.

    labsyspharm/minerva-author-ui’s past year of commit activity
    JavaScript 4 MIT 5 2 4 Updated Oct 30, 2024
  • mcmicro-lsp Public

    mcmicro helpers for local use within the LSP (especially O2)

    labsyspharm/mcmicro-lsp’s past year of commit activity
    Shell 0 MIT 0 0 0 Updated Oct 28, 2024
  • palom Public

    Piecewise alignment for layers of mosaics

    labsyspharm/palom’s past year of commit activity
    Python 20 MIT 4 4 2 Updated Oct 26, 2024
  • sarek-variant-calling-pipeline Public
    labsyspharm/sarek-variant-calling-pipeline’s past year of commit activity
    Shell 0 0 0 0 Updated Oct 24, 2024
  • mcqc Public

    Quality control module for mcmicro

    labsyspharm/mcqc’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Oct 22, 2024
  • mcmicro Public

    Multiple-choice microscopy pipeline

    labsyspharm/mcmicro’s past year of commit activity
    Nextflow 107 MIT 58 57 2 Updated Oct 18, 2024
  • minerva-author Public

    Tool to create images and configuration files for Minerva-Story

    labsyspharm/minerva-author’s past year of commit activity
    Python 15 MIT 14 19 1 Updated Oct 17, 2024
  • ad-rna-editing Public
    labsyspharm/ad-rna-editing’s past year of commit activity
    R 0 0 0 0 Updated Oct 16, 2024
  • harvardtissueatlas Public

    Harvard Tissue Atlas website

    labsyspharm/harvardtissueatlas’s past year of commit activity
    SCSS 3 6 3 0 Updated Oct 15, 2024
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