Skip to content
View jakobnissen's full-sized avatar
💭
Version control is not a social network
💭
Version control is not a social network
208 followers · 5 following

Achievements

Achievement: Pair Extraordinairex3Achievement: Public SponsorAchievement: YOLOAchievement: Pull Sharkx3Achievement: Starstruckx2Achievement: Arctic Code Vault Contributor

Achievements

Achievement: Pair Extraordinairex3Achievement: Public SponsorAchievement: YOLOAchievement: Pull Sharkx3Achievement: Starstruckx2Achievement: Arctic Code Vault Contributor

Highlights

  • Pro

Organizations

@BioJulia @RasmussenLab

Block or report jakobnissen

Block user

Prevent this user from interacting with your repositories and sending you notifications. Learn more about blocking users.

You must be logged in to block users.

Please don't include any personal information such as legal names or email addresses. Maximum 100 characters, markdown supported. This note will be visible to only you.
Report abuse

Contact GitHub support about this user’s behavior. Learn more about reporting abuse.

Report abuse
jakobnissen/README.md

Welcome to my GitHub page

I'm Jakob, a biologist-turned-programmer, happy in my role as a research software engineer.

I work as an assistant professor at CPR, Copenhagen University researching metagenomics with particular interest in virus- and plasmid metagenomics. Biologically, my interests are in phylogenetics, molecular evolution and sub-genomic replicons. On the computer science side, I'm a Julia, Rust and Python enthusiast, contributing to BioJulia and Julia. I particularly enjoy writing optimized and generic software packages for bioinformatics.

Highlighted work:

Selected repositories

Repositories I maintain

Pinned Loading

  1. RasmussenLab/vamb RasmussenLab/vamb Public

    Variational autoencoder for metagenomic binning

    Python 253 45

  2. hardware_introduction hardware_introduction Public

    What scientific programmers must know about CPUs and RAM to write fast code.

    Julia 431 36

  3. alen alen Public

    Simple terminal alignment viewer

    Rust 78 5

  4. ScanByte.jl ScanByte.jl Public

    Find your bytes. Fast.

    Julia 25

  5. StackCollections.jl StackCollections.jl Public

    Fixed-bit collections in Julia

    Julia 14 1

  6. ErrorTypes.jl ErrorTypes.jl Public

    Rust-like error types in Julia

    Julia 49 2