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--- | ||
title: "BigTrace plugin" # "Your_Plugin/Software_project_name" | ||
categories: [ Fiji/ImageJ , BigDataViewer, imglib2, BigVolumeViewer] # Add categories for your project" | ||
execute: | ||
echo: false | ||
about: | ||
id: Aheading | ||
template: jolla | ||
image-shape: rounded | ||
image-width: 15em | ||
links: # Add details and copy/remove whole block if you need to change number of links. | ||
- text: Contact | ||
icon: envelope | ||
href: mailto:[email protected] | ||
- text: Documentation | ||
icon: archive | ||
href: https://github.com/ekatrukha/BigTrace/wiki | ||
- text: Tutorial | ||
icon: youtube | ||
href: https://www.youtube.com/watch?v=Viqf4txCCJ0 | ||
- text: Fiji-imageJ | ||
icon: image | ||
href: https://imagej.net/plugins/bigtrace | ||
--- | ||
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::: {.alignleft} | ||
![](BigTrace_logo.png){width=356} # If you have a figure/logo for project change name accordingly. | ||
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FIJI plugin for tracing and analysis of curvilinear structures (filaments, vessels, neurites) in volumetric microscopy datasets. | ||
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The plugin implements 3D ROIs (points, straight/curved lines, planes) | ||
for manual/semi-automatic segmentation of lines, curves, and spotty objects. | ||
It allows volumetric measurements of intensity and geometrical features. | ||
The plugin is scriptable using ImageJ macros. | ||
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::: |
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