Use quay.io/hisplan

hisplan · Aug 5, 2021 · aea58c1 · aea58c1
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Showing 16 changed files with 16 additions and 16 deletions.
diff --git a/tests/test.AnnData.inputs.json b/tests/test.AnnData.inputs.json
@@ -13,5 +13,5 @@
     ],
     "AnnData.htoClassification": "s3://dp-lab-gwf-core/cromwell-execution/Hashtag/fc3c840b-ddbf-48bb-b73c-b0d73d855acf/call-HtoDemuxKMeans/classification.tsv.gz",
     "AnnData.adata": "s3://dp-lab-gwf-core/cromwell-execution/Hashtag/fc3c840b-ddbf-48bb-b73c-b0d73d855acf/call-Preprocess/Preprocess/296d6973-1d1b-4767-a1ea-986b8991e685/call-ToAnnData/1973_HD1915_7xNK_FB_HTO.h5ad",
-    "AnnData.dockerRegistry": "583643567512.dkr.ecr.us-east-1.amazonaws.com"
+    "AnnData.dockerRegistry": "quay.io/hisplan"
 }
diff --git a/tests/test.Combine.inputs.json b/tests/test.Combine.inputs.json
@@ -2,5 +2,5 @@
     "Combine.denseCountMatrix": "s3://dp-lab-data/collaborators/hsuk/7xNK/HD1915_7xNK/seqc-results/1973_HD1915_7xNK_IGO_10657_2_dense.csv",
     "Combine.htoClassification": "s3://dp-lab-batch/cromwell-execution/Sharp/92b1d131-7106-4d3b-9797-c8277be8b31b/call-HtoDemuxKMeans/final-classification.tsv.gz",
     "Combine.translate10XBarcodes": false,
-    "Combine.dockerRegistry": "583643567512.dkr.ecr.us-east-1.amazonaws.com"
+    "Combine.dockerRegistry": "quay.io/hisplan"
 }
diff --git a/tests/test.Count.inputs.json b/tests/test.Count.inputs.json
@@ -17,6 +17,6 @@
         "cpu": 16,
         "memory": 64
     },
-    "Count.dockerRegistry": "583643567512.dkr.ecr.us-east-1.amazonaws.com",
+    "Count.dockerRegistry": "quay.io/hisplan",
     "Count.version": "1.4.2-develop"
 }
diff --git a/tests/test.CountReads.inputs.json b/tests/test.CountReads.inputs.json
@@ -1,4 +1,4 @@
 {
     "CountReads.fastq": "s3://dp-lab-gwf-core/cromwell-execution/Sharp/9871b993-8312-4007-8252-50d88958d03f/call-Preprocess/Preprocess/6881e065-5aa9-410d-8929-3d985aea7f70/call-TrimR1/cacheCopy/R1.fastq.gz",
-    "CountReads.dockerRegistry": "583643567512.dkr.ecr.us-east-1.amazonaws.com"
+    "CountReads.dockerRegistry": "quay.io/hisplan"
 }
diff --git a/tests/test.CutInDropSpacer.inputs.json b/tests/test.CutInDropSpacer.inputs.json
@@ -2,5 +2,5 @@
     "CutInDropSpacer.fastq": "gs://chunj-cromwell/indrop-trim-R1-1000.fastq.gz",
     "CutInDropSpacer.assayVersion": "2",
     "CutInDropSpacer.outFileName": "trim-R1.fastq.gz",
-    "CutInDropSpacer.dockerRegistry": "583643567512.dkr.ecr.us-east-1.amazonaws.com"
+    "CutInDropSpacer.dockerRegistry": "quay.io/hisplan"
 }
diff --git a/tests/test.Cutadapt.inputs.json b/tests/test.Cutadapt.inputs.json
@@ -3,5 +3,5 @@
     "Cutadapt.fastqR2": "gs://chunj-cromwell/cromwell-execution/MergeFastq/2361732a-b663-4089-9471-d18556db2435/call-MergeFastqR2/IL10neg_HTO_IGO_10034_23_S2_R2.fastq.gz",
     "Cutadapt.lengthR1": 28,
     "Cutadapt.lengthR2": 15,
-    "Cutadapt.dockerRegistry": "583643567512.dkr.ecr.us-east-1.amazonaws.com"
+    "Cutadapt.dockerRegistry": "quay.io/hisplan"
 }
diff --git a/tests/test.FastQC.inputs.json b/tests/test.FastQC.inputs.json
@@ -3,5 +3,5 @@
         "s3://dp-lab-batch/cromwell-execution/Sharp/da2cf736-1504-4936-8850-2c405bdfcf3f/call-MergeFastqR2/IL10neg_HTO_IGO_10034_23_S2_R2.fastq.gz",
         "s3://dp-lab-batch/cromwell-execution/Sharp/da2cf736-1504-4936-8850-2c405bdfcf3f/call-MergeFastqR1/IL10neg_HTO_IGO_10034_23_S2_R1.fastq.gz"
     ],
-    "FastQC.dockerRegistry": "583643567512.dkr.ecr.us-east-1.amazonaws.com"
+    "FastQC.dockerRegistry": "quay.io/hisplan"
 }
diff --git a/tests/test.HtoDemuxKMeans.inputs.json b/tests/test.HtoDemuxKMeans.inputs.json
@@ -4,5 +4,5 @@
         "gs://chunj-cromwell/cromwell-execution/Count/fae92864-6f89-4c57-8a2f-62d69f4ac2db/call-CiteSeqCount/glob-5b2373ebac80816456a7726e786fc4d4/features.tsv.gz",
         "gs://chunj-cromwell/cromwell-execution/Count/fae92864-6f89-4c57-8a2f-62d69f4ac2db/call-CiteSeqCount/glob-5b2373ebac80816456a7726e786fc4d4/matrix.mtx.gz"
     ],
-    "HtoDemuxKMeans.dockerRegistry": "583643567512.dkr.ecr.us-east-1.amazonaws.com"
+    "HtoDemuxKMeans.dockerRegistry": "quay.io/hisplan"
 }
diff --git a/tests/test.HtoDemuxSeurat.inputs.json b/tests/test.HtoDemuxSeurat.inputs.json
@@ -5,5 +5,5 @@
         "s3://dp-lab-batch/cromwell-execution/Sharp/3fab897c-9087-4ae3-b739-6fb31ed00df8/call-CiteSeqCount/glob-5b2373ebac80816456a7726e786fc4d4/matrix.mtx.gz"
     ],
     "HtoDemuxSeurat.quantile": 0.99,
-    "HtoDemuxSeurat.dockerRegistry": "583643567512.dkr.ecr.us-east-1.amazonaws.com"
+    "HtoDemuxSeurat.dockerRegistry": "quay.io/hisplan"
 }
diff --git a/tests/test.PrepCBWhitelist.10x.inputs.json b/tests/test.PrepCBWhitelist.10x.inputs.json
@@ -1,5 +1,5 @@
 {
     "PrepCBWhitelist.inputFile": "s3://dp-lab-data/collaborators/sunj/AsapseqTest/ASAPseq_test_ATAC/CR-results/count/outs/filtered_peak_bc_matrix/barcodes.tsv",
     "PrepCBWhitelist.method": "10x",
-    "PrepCBWhitelist.dockerRegistry": "583643567512.dkr.ecr.us-east-1.amazonaws.com"
+    "PrepCBWhitelist.dockerRegistry": "quay.io/hisplan"
 }
diff --git a/tests/test.PrepCBWhitelist.inputs.json b/tests/test.PrepCBWhitelist.inputs.json
@@ -1,5 +1,5 @@
 {
     "PrepCBWhitelist.inputFile": "s3://dp-lab-data/collaborators/tammela/KP_Sarcoma/PDX_RPS8370_MFHX0010a/seqc-results/2623_PDX_RPS8370_MFHX0010a_IGO_12068_7_dense.csv",
     "PrepCBWhitelist.method": "SeqcDenseCountsMatrixCsv",
-    "PrepCBWhitelist.dockerRegistry": "583643567512.dkr.ecr.us-east-1.amazonaws.com"
+    "PrepCBWhitelist.dockerRegistry": "quay.io/hisplan"
 }
diff --git a/tests/test.PrepCBWhitelist.seqc-sparse.inputs.json b/tests/test.PrepCBWhitelist.seqc-sparse.inputs.json
@@ -1,5 +1,5 @@
 {
     "PrepCBWhitelist.inputFile": "gs://chunj-cromwell/1187_IL10neg_P163_IGO_09902_8_sparse_counts_barcodes.csv",
     "PrepCBWhitelist.method": "SeqcSparseCountsBarcodesCsv",
-    "PrepCBWhitelist.dockerRegistry": "583643567512.dkr.ecr.us-east-1.amazonaws.com"
+    "PrepCBWhitelist.dockerRegistry": "quay.io/hisplan"
 }
diff --git a/tests/test.Preprocess.inputs.json b/tests/test.Preprocess.inputs.json
@@ -26,5 +26,5 @@
         "cpu": 4,
         "memory": 64
     },
-    "Preprocess.dockerRegistry": "hisplan"
+    "Preprocess.dockerRegistry": "quay.io/hisplan"
 }
diff --git a/tests/test.ReformatFastq.inputs.json b/tests/test.ReformatFastq.inputs.json
@@ -15,5 +15,5 @@
     "ReformatFastq.conjugation": "TotalSeqA",
     "ReformatFastq.noReverseComplementR2": false,
     "ReformatFastq.numCores": 4,
-    "ReformatFastq.dockerRegistry": "583643567512.dkr.ecr.us-east-1.amazonaws.com"
+    "ReformatFastq.dockerRegistry": "quay.io/hisplan"
 }
diff --git a/tests/test.SanityCheck.inputs.json b/tests/test.SanityCheck.inputs.json
@@ -5,5 +5,5 @@
     "SanityCheck.cbBarcode1": "TCGACATC",
     "SanityCheck.cbSpacer": "CATG",
     "SanityCheck.cbBarcode2": "CTCAGCTA",
-    "SanityCheck.dockerRegistry": "583643567512.dkr.ecr.us-east-1.amazonaws.com"
+    "SanityCheck.dockerRegistry": "quay.io/hisplan"
 }
diff --git a/tests/test.TranslateBarcodes.inputs.json b/tests/test.TranslateBarcodes.inputs.json
@@ -9,5 +9,5 @@
         "s3://dp-lab-batch/cromwell-execution/Sharp/b7fa5760-a2f1-4b3a-bbcd-eb2064165cd5/call-CiteSeqCount/glob-5b2373ebac80816456a7726e786fc4d4/features.tsv.gz",
         "s3://dp-lab-batch/cromwell-execution/Sharp/b7fa5760-a2f1-4b3a-bbcd-eb2064165cd5/call-CiteSeqCount/glob-5b2373ebac80816456a7726e786fc4d4/matrix.mtx.gz"
     ],
-    "TranslateBarcodes.dockerRegistry": "583643567512.dkr.ecr.us-east-1.amazonaws.com"
+    "TranslateBarcodes.dockerRegistry": "quay.io/hisplan"
 }