first pass at indexing Adhurya, S., Lee, D.-Y., & Park, Y.-S. (2024).…

… KF-metaweb: A trophic metaweb of freshwater ecosystems of South Korea. Global Ecology and Biogeography, 00, e13845. https://doi.org/10.1111/geb.13845; related to globalbioticinteractions/globalbioticinteractions#982

.github/workflows/review.yml

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+# This workflow will review a GloBI indexed dataset.
+# For more information see: https://globalbioticinteractions.org
+
+name: GloBI review by Elton
+
+on:
+  push:
+    branches: [ '*' ]
+  pull_request:
+    branches: [ '*' ]
+  schedule:
+    - cron: "0 0 * * 1"
+
+jobs:
+  review:
+    runs-on: ubuntu-latest
+    steps:
+    - uses: actions/checkout@v4
+    - name: Set up JDK 1.8
+      uses: actions/setup-java@v4
+      with:
+        distribution: 'temurin' 
+        java-version: '8'   
+    - name: download review script
+      run: curl --silent -L "https://raw.githubusercontent.com/globalbioticinteractions/globinizer/master/check-dataset.sh" > check-dataset.sh
+    - name: download network compiler script
+      run: |
+        curl --silent -L "https://raw.githubusercontent.com/globalbioticinteractions/globinizer/master/compile-network.sh" > compile-network.sh
+        chmod +x compile-network.sh
+    - name: review dataset
+      run: bash check-dataset.sh "${GITHUB_REPOSITORY}" 
+    - name: Share review report
+      uses: actions/upload-artifact@v4
+      with:
+        name: review-report
+        path: |
+          README.txt
+          datasets/ 
+          index.*
+          indexed-* 
+          review* 

.gitignore

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+.elton/
+add_travis_artifact_upload_keys.sh
+datasets/

README.md

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+[![GloBI Review by Elton](../../actions/workflows/review.yml/badge.svg)](../../actions/workflows/review.yml) [![GloBI](https://api.globalbioticinteractions.org/interaction.svg?accordingTo=globi:globalbioticinteractions/kf-metaweb)](https://globalbioticinteractions.org/?accordingTo=globi:globalbioticinteractions/kf-metaweb) 
+
+This repository enables Global Biotic Interactions (GloBI, http://globalbioticinteractions.org) to index interaction data associated with:
+
+Adhurya, S., Lee, D.-Y., & Park, Y.-S. (2024). KF-metaweb: A trophic metaweb of freshwater ecosystems of South Korea. Global Ecology and Biogeography, 00, e13845. https://doi.org/10.1111/geb.13845 .

globi.json

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+{
+  "@context": [
+    "http://www.w3.org/ns/csvw",
+    {
+      "@language": "en"
+    }
+  ],
+  "rdfs:comment": [
+    "inspired by https://www.w3.org/TR/2015/REC-tabular-data-model-20151217/"
+  ],
+  "resources": {
+    "xlsx:https://datadryad.org/stash/downloads/file_stream/3078242!/Reference": "references.tsv",
+    "xlsx:https://datadryad.org/stash/downloads/file_stream/3078242!/Metaweb": "metaweb.tsv",
+    "xlsx:https://datadryad.org/stash/downloads/file_stream/3078242!/Node%20Taxonomy": "taxonomy.tsv"
+  },
+  "tables": [
+    {
+      "dcterms:bibliographicCitation": "Adhurya, Sagar; Lee, Da-Yeong; Park, Young-Seuk (2024). KF-metaweb: A trophic metaweb of freshwater ecosystems of South Korea (Version 1.0) [Dataset]. Dryad. https://doi.org/10.5061/dryad.cz8w9gjbc",
+      "url": "xlsx:https://datadryad.org/stash/downloads/file_stream/3078242!/Reference",
+      "headerRowCount": 1,
+      "delimiter": "\t",
+      "null": [
+        "NULL",
+        ""
+      ],
+      "tableSchema": {
+        "columns": [
+          {
+            "name": "referenceId",
+            "titles": "Reference number",
+            "datatype": "string"
+          },
+          {
+            "name": "referenceCitation",
+            "titles": "Reference",
+            "datatype": "string"
+          }
+        ],
+        "primaryKey": "referenceId"
+      }
+    },
+    {
+      "dcterms:bibliographicCitation": "Adhurya, Sagar; Lee, Da-Yeong; Park, Young-Seuk (2024). KF-metaweb: A trophic metaweb of freshwater ecosystems of South Korea (Version 1.0) [Dataset]. Dryad. https://doi.org/10.5061/dryad.cz8w9gjbc",
+      "url": "xlsx:https://datadryad.org/stash/downloads/file_stream/3078242!/Metaweb",
+      "headerRowCount": 1,
+      "delimiter": "\t",
+      "interactionTypeName": "eats",
+      "interactionTypeId": "http://purl.obolibrary.org/obo/RO_0002470",
+      "null": [
+        "NULL",
+        ""
+      ],
+      "tableSchema": {
+        "columns": [
+          {
+            "name": "targetTaxonId",
+            "titles": "resource",
+            "datatype": "string"
+          },
+          {
+            "name": "sourceTaxonId",
+            "titles": "consumer",
+            "datatype": "string"
+          },
+          {
+            "name": "referenceId",
+            "titles": "Reference",
+            "datatype": "string",
+            "separator": ","
+          }
+        ],
+        "foreignKeys": [
+          {
+            "columnReference": "targetTaxonId",
+            "reference": {
+              "columnReference": "taxonId"
+            }
+          },
+          {
+            "columnReference": "sourceTaxonId",
+            "reference": {
+              "columnReference": "taxonId"
+            }
+          },
+          {
+            "columnReference": "referenceId",
+            "reference": {
+              "columnReference": "referenceId"
+            }
+          }
+        ]
+      }
+    },
+    {
+      "dcterms:bibliographicCitation": "Adhurya, Sagar; Lee, Da-Yeong; Park, Young-Seuk (2024). KF-metaweb: A trophic metaweb of freshwater ecosystems of South Korea (Version 1.0) [Dataset]. Dryad. https://doi.org/10.5061/dryad.cz8w9gjbc",
+      "url": "xlsx:https://datadryad.org/stash/downloads/file_stream/3078242!/Node%20Taxonomy",
+      "headerRowCount": 1,
+      "delimiter": "\t",
+      "null": [
+        "NULL",
+        ""
+      ],
+      "tableSchema": {
+        "columns": [
+          {
+            "name": "taxonId",
+            "titles": "Node",
+            "datatype": "string"
+          },
+          {
+            "name": "taxonGenusName",
+            "titles": "Genus",
+            "datatype": "string"
+          },
+          {
+            "name": "taxonFamilyName",
+            "titles": "Family",
+            "datatype": "string"
+          },
+          {
+            "name": "taxonOrderName",
+            "titles": "Order",
+            "datatype": "string"
+          },
+          {
+            "name": "taxonClassName",
+            "titles": "Class",
+            "datatype": "string"
+          },
+          {
+            "name": "taxonPhylumName",
+            "titles": "Phylum",
+            "datatype": "string"
+          },
+          {
+            "name": "taxonKingdomName",
+            "titles": "Kingdom",
+            "datatype": "string"
+          },
+          {
+            "name": "Category",
+            "titles": "Category",
+            "datatype": "string"
+          }
+        ],
+        "primaryKey": "taxonId"
+      }
+    }
+  ]
+}