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first pass at indexing Adhurya, S., Lee, D.-Y., & Park, Y.-S. (2024).…
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… KF-metaweb: A trophic metaweb of freshwater ecosystems of South Korea. Global Ecology and Biogeography, 00, e13845. https://doi.org/10.1111/geb.13845; related to globalbioticinteractions/globalbioticinteractions#982
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Jorrit Poelen committed Jun 5, 2024
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41 changes: 41 additions & 0 deletions .github/workflows/review.yml
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# This workflow will review a GloBI indexed dataset.
# For more information see: https://globalbioticinteractions.org

name: GloBI review by Elton

on:
push:
branches: [ '*' ]
pull_request:
branches: [ '*' ]
schedule:
- cron: "0 0 * * 1"

jobs:
review:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
- name: Set up JDK 1.8
uses: actions/setup-java@v4
with:
distribution: 'temurin'
java-version: '8'
- name: download review script
run: curl --silent -L "https://raw.githubusercontent.com/globalbioticinteractions/globinizer/master/check-dataset.sh" > check-dataset.sh
- name: download network compiler script
run: |
curl --silent -L "https://raw.githubusercontent.com/globalbioticinteractions/globinizer/master/compile-network.sh" > compile-network.sh
chmod +x compile-network.sh
- name: review dataset
run: bash check-dataset.sh "${GITHUB_REPOSITORY}"
- name: Share review report
uses: actions/upload-artifact@v4
with:
name: review-report
path: |
README.txt
datasets/
index.*
indexed-*
review*
3 changes: 3 additions & 0 deletions .gitignore
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.elton/
add_travis_artifact_upload_keys.sh
datasets/
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5 changes: 5 additions & 0 deletions README.md
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[![GloBI Review by Elton](../../actions/workflows/review.yml/badge.svg)](../../actions/workflows/review.yml) [![GloBI](https://api.globalbioticinteractions.org/interaction.svg?accordingTo=globi:globalbioticinteractions/kf-metaweb)](https://globalbioticinteractions.org/?accordingTo=globi:globalbioticinteractions/kf-metaweb)

This repository enables Global Biotic Interactions (GloBI, http://globalbioticinteractions.org) to index interaction data associated with:

Adhurya, S., Lee, D.-Y., & Park, Y.-S. (2024). KF-metaweb: A trophic metaweb of freshwater ecosystems of South Korea. Global Ecology and Biogeography, 00, e13845. https://doi.org/10.1111/geb.13845 .
150 changes: 150 additions & 0 deletions globi.json
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{
"@context": [
"http://www.w3.org/ns/csvw",
{
"@language": "en"
}
],
"rdfs:comment": [
"inspired by https://www.w3.org/TR/2015/REC-tabular-data-model-20151217/"
],
"resources": {
"xlsx:https://datadryad.org/stash/downloads/file_stream/3078242!/Reference": "references.tsv",
"xlsx:https://datadryad.org/stash/downloads/file_stream/3078242!/Metaweb": "metaweb.tsv",
"xlsx:https://datadryad.org/stash/downloads/file_stream/3078242!/Node%20Taxonomy": "taxonomy.tsv"
},
"tables": [
{
"dcterms:bibliographicCitation": "Adhurya, Sagar; Lee, Da-Yeong; Park, Young-Seuk (2024). KF-metaweb: A trophic metaweb of freshwater ecosystems of South Korea (Version 1.0) [Dataset]. Dryad. https://doi.org/10.5061/dryad.cz8w9gjbc",
"url": "xlsx:https://datadryad.org/stash/downloads/file_stream/3078242!/Reference",
"headerRowCount": 1,
"delimiter": "\t",
"null": [
"NULL",
""
],
"tableSchema": {
"columns": [
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],
"primaryKey": "referenceId"
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{
"dcterms:bibliographicCitation": "Adhurya, Sagar; Lee, Da-Yeong; Park, Young-Seuk (2024). KF-metaweb: A trophic metaweb of freshwater ecosystems of South Korea (Version 1.0) [Dataset]. Dryad. https://doi.org/10.5061/dryad.cz8w9gjbc",
"url": "xlsx:https://datadryad.org/stash/downloads/file_stream/3078242!/Metaweb",
"headerRowCount": 1,
"delimiter": "\t",
"interactionTypeName": "eats",
"interactionTypeId": "http://purl.obolibrary.org/obo/RO_0002470",
"null": [
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""
],
"tableSchema": {
"columns": [
{
"name": "targetTaxonId",
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{
"dcterms:bibliographicCitation": "Adhurya, Sagar; Lee, Da-Yeong; Park, Young-Seuk (2024). KF-metaweb: A trophic metaweb of freshwater ecosystems of South Korea (Version 1.0) [Dataset]. Dryad. https://doi.org/10.5061/dryad.cz8w9gjbc",
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""
],
"tableSchema": {
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{
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"titles": "Node",
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},
{
"name": "taxonGenusName",
"titles": "Genus",
"datatype": "string"
},
{
"name": "taxonFamilyName",
"titles": "Family",
"datatype": "string"
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{
"name": "taxonOrderName",
"titles": "Order",
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{
"name": "taxonClassName",
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"datatype": "string"
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{
"name": "taxonPhylumName",
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"datatype": "string"
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{
"name": "taxonKingdomName",
"titles": "Kingdom",
"datatype": "string"
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{
"name": "Category",
"titles": "Category",
"datatype": "string"
}
],
"primaryKey": "taxonId"
}
}
]
}
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