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hicBuildMatrix: allow zero min repeats for bins so not compulsorily on the command line #6457

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@fubar2 fubar2 commented Oct 15, 2024

Binsize is currently in a form repeat with default length of 1 and a single default value so it always appears on the command line - there is no way to run the tool without it at present.

This PR changes those repeat limits to zero. That allows binsize not to be set, so the command line does not have --binsize. Sometimes that may be appropriate. It certainly appears to have an effect on the way things are reported..

New test added and test artifacts numbered so they can be compared - the new test without binsize gives very different outputs to the otherwise identical existing test with a binsize of 5k. At least this PR gives a user the opportunity to not use binsize FWIW.

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