NUPACK-based Concentration Plots

Setup

Download and compile Nupack 3 and set the NUPACKHOME environment variable to the nupack root directory
Install python requirements via pip install -r requirements.txt

You can make a set of plots for a single sequence by running

python plot_conc_space.py [SEQUENCE] R105_states.txt -o output.png -t [TITLE]

The R105_states.txt specifies the input and reporter sequences as well as which complexes to include in the calculation.

Name		Name	Last commit message	Last commit date
Latest commit History 17 Commits
.gitignore		.gitignore
LICENSE		LICENSE
R104_states.txt		R104_states.txt
R105_states.txt		R105_states.txt
README.md		README.md
nupack.py		nupack.py
plot_conc_space.py		plot_conc_space.py
requirements.txt		requirements.txt
setup.py		setup.py