Release #459
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Release | |
| on: | |
| workflow_dispatch: | |
| push: | |
| branches: ['*'] | |
| tags: ['*'] | |
| paths-ignore: | |
| - 'docs/**' | |
| pull_request: | |
| branches: [main] | |
| paths-ignore: | |
| - 'docs/**' | |
| permissions: | |
| # needs write permission at workflow level to create release and upload artifacts | |
| contents: write | |
| env: | |
| MPLBACKEND: 'agg' | |
| TEST_DEPS: pytest pytest-qt pytest-xdist pytest-rerunfailures pytest-mpl filelock | |
| jobs: | |
| create_release_job: | |
| name: Create Release (on tag only) | |
| runs-on: ubuntu-latest | |
| outputs: | |
| ID: ${{ steps.create_release.outputs.id }} | |
| VERSION: ${{ env.VERSION }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Get version (on tag) | |
| if: startsWith(github.ref, 'refs/tags/') | |
| run: | | |
| echo "VERSION=${GITHUB_REF#refs/*/}" >> $GITHUB_ENV | |
| - name: Get version (short hash) | |
| if: ${{ startsWith(github.ref, 'refs/tags/') == false }} | |
| run: | | |
| # Use git short hash instead of tag | |
| echo "VERSION=$(git rev-parse --short HEAD)" >> $GITHUB_ENV | |
| - name: Display version | |
| run: | | |
| echo ${{ env.VERSION }} | |
| - name: Find and Replace | |
| uses: jacobtomlinson/gha-find-replace@a51bbcd94d000df9ca0fcb54ec8be69aad8374b0 | |
| if: startsWith(github.ref, 'refs/tags/') | |
| with: | |
| find: "__TAG__" | |
| replace: ${{ env.VERSION }} | |
| include: "RELEASE_TEXT.md" # Will match all RELEASE_TEXT.md files in any nested directory | |
| - name: Create Release | |
| if: startsWith(github.ref, 'refs/tags/') | |
| id: create_release | |
| uses: softprops/action-gh-release@c062e08bd532815e2082a85e87e3ef29c3e6d191 | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} # This token is provided by Actions | |
| with: | |
| body_path: "RELEASE_TEXT.md" | |
| draft: true | |
| build: | |
| name: ${{ matrix.TARGET_PLATFORM }}-${{ matrix.BLAS_IMPL }} | |
| needs: create_release_job | |
| runs-on: ${{ matrix.os }}-${{ matrix.os_version }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| include: | |
| - os: ubuntu | |
| os_version: latest | |
| INSTALLER_EXTENSION: sh | |
| BLAS_IMPL: mkl | |
| ARCH: x86_64 | |
| TARGET_PLATFORM: linux-64 | |
| - os: ubuntu | |
| os_version: latest | |
| INSTALLER_EXTENSION: sh | |
| BLAS_IMPL: openblas | |
| ARCH: x86_64 | |
| TARGET_PLATFORM: linux-64 | |
| - os: windows | |
| os_version: latest | |
| INSTALLER_EXTENSION: exe | |
| BLAS_IMPL: mkl | |
| ARCH: x86_64 | |
| TARGET_PLATFORM: win-64 | |
| - os: windows | |
| os_version: latest | |
| INSTALLER_EXTENSION: exe | |
| BLAS_IMPL: openblas | |
| ARCH: x86_64 | |
| TARGET_PLATFORM: win-64 | |
| - os: macos | |
| os_version: '13' | |
| INSTALLER_EXTENSION: pkg | |
| BLAS_IMPL: mkl | |
| ARCH: x86_64 | |
| TARGET_PLATFORM: osx-64 | |
| - os: macos | |
| os_version: latest | |
| INSTALLER_EXTENSION: pkg | |
| BLAS_IMPL: accelerate | |
| ARCH: arm64 | |
| TARGET_PLATFORM: osx-arm64 | |
| env: | |
| DISPLAY: ':0' | |
| MICROMAMBA_VERSION: '1.5.8' | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| miniforge-variant: Mambaforge | |
| channels: conda-forge | |
| channel-priority: strict | |
| - shell: bash -l {0} | |
| name: Conda info | |
| run: | | |
| conda info | |
| conda list | |
| - shell: bash -l {0} | |
| name: Install constructor | |
| run: | | |
| mamba install constructor jinja2 conda-libmamba-solver | |
| - shell: bash -l {0} | |
| if: matrix.ARCH == 'arm64' | |
| name: Install micromamba | |
| run: | | |
| TEMP_DIR=$(mktemp -d) | |
| mkdir "${TEMP_DIR}/micromamba" | |
| pushd "${TEMP_DIR}/micromamba" | |
| curl -L -O "https://anaconda.org/conda-forge/micromamba/${{ env.MICROMAMBA_VERSION }}/download/${{ matrix.TARGET_PLATFORM }}/micromamba-${{ env.MICROMAMBA_VERSION }}-0.tar.bz2" | |
| bsdtar -xf "micromamba-${{ env.MICROMAMBA_VERSION }}-0.tar.bz2" | |
| echo "MICROMAMBA_FILE=${PWD}/bin/micromamba" >> $GITHUB_ENV | |
| ls ${PWD} | |
| ls ${PWD}/bin | |
| popd | |
| - shell: bash -l {0} | |
| name: Build distribution | |
| env: | |
| VERSION: ${{ needs.create_release_job.outputs.VERSION }} | |
| BLAS_IMPL: ${{ matrix.BLAS_IMPL }} | |
| CONDA_SOLVER: 'libmamba' | |
| run: | | |
| if [ ${{ matrix.TARGET_PLATFORM }} == osx-arm64 ]; then | |
| constructor -v conda_distribution --platform ${{ matrix.TARGET_PLATFORM }} --conda-exe ${{ env.MICROMAMBA_FILE }} | |
| else | |
| constructor -v conda_distribution | |
| fi | |
| - shell: bash -l {0} | |
| name: Set asset name | |
| env: | |
| ext: ${{ matrix.INSTALLER_EXTENSION }} | |
| run: | | |
| installer_name=(HyperSpy-*.${{ env.ext }}) | |
| echo "Original installer name: " $installer_name | |
| # Rename installer name according to BLAS_IMPL | |
| if [ ${{ matrix.TARGET_PLATFORM }} = osx-arm64 ]; then | |
| CPU=Silicon | |
| elif [ ${{ matrix.BLAS_IMPL }} = mkl ]; then | |
| CPU=Intel | |
| else | |
| CPU=AMD | |
| fi | |
| new_installer_name=$(basename $installer_name .${{ env.ext }})-$CPU.${{ env.ext }} | |
| mv $installer_name $new_installer_name | |
| echo "asset_name=$new_installer_name" >> $GITHUB_ENV | |
| echo "Installer name: "$new_installer_name | |
| ls | |
| - name: Get hash | |
| run: | | |
| shasum -a 256 ${{ env.asset_name }} | |
| - name: Install new distribution (Linux) | |
| if: runner.os == 'linux' | |
| env: | |
| install_dir: '${{ github.workspace }}/new_distribution' | |
| run: | | |
| echo "install_dir=${{ env.install_dir }}" >> $GITHUB_ENV | |
| bash ${{ env.asset_name }} -b -p ${{ env.install_dir }} | |
| - name: Install new distribution (MacOS) | |
| if: runner.os == 'macos' | |
| run: | | |
| echo "install_dir=/Users/runner" >> $GITHUB_ENV | |
| installer -pkg ${{ env.asset_name }} -target CurrentUserHomeDirectory | |
| - name: Install new distribution (Windows) | |
| if: runner.os == 'windows' | |
| env: | |
| install_dir: '${{ github.workspace }}\nd' | |
| shell: bash | |
| run: | | |
| echo "install_dir=${{ env.install_dir }}" >> $GITHUB_ENV | |
| - name: Install new distribution (Windows) | |
| if: runner.os == 'windows' | |
| shell: powershell | |
| run: | | |
| Start-Process -Wait -FilePath ${{ env.asset_name }} -ArgumentList "/S /AddToPath=0 /RegisterPython=0 /NoScripts=1 /D=${{ env.install_dir }}" | |
| - name: Upload artifact | |
| if: startsWith(github.ref, 'refs/tags/') != true | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| path: ${{ env.asset_name }} | |
| name: ${{ env.asset_name }} | |
| - shell: bash -l {0} | |
| name: Info new distribution | |
| run: | | |
| conda activate "${{ env.install_dir }}" | |
| conda info | |
| conda config --show channels | |
| conda config --show channel_priority | |
| conda list | |
| - shell: bash -l {0} | |
| name: Check latest available hyperspy version | |
| run: | | |
| conda activate "${{ env.install_dir }}" | |
| python check_hyperspy_latest.py | |
| - name: Install xvfb | |
| if: runner.os == 'linux' && always() | |
| run: | | |
| sudo apt-get install -y xvfb libxkbcommon-x11-0 libxcb-icccm4 libxcb-image0 libxcb-keysyms1 libxcb-randr0 libxcb-render-util0 libxcb-xinerama0 libxcb-xinput0 libxcb-xfixes0 | |
| - name: Start xvfb | |
| if: runner.os == 'linux' && always() | |
| run: | | |
| sudo /usr/bin/Xvfb ${{ env.DISPLAY }} -screen 0 1280x1024x24 & | |
| - shell: bash -l {0} | |
| name: Install test dependencies | |
| if: always() | |
| run: | | |
| conda activate "${{ env.install_dir }}" | |
| mamba install ${{ env.TEST_DEPS }} | |
| - shell: bash -l {0} | |
| # TODO: revisit at some point, to get it to work on linux (hyperspyui CI works fine...) | |
| if: runner.os != 'linux' && always() | |
| name: Test new distribution (HyperSpyUI) | |
| run: | | |
| conda activate "${{ env.install_dir }}" | |
| pytest --pyargs hyperspyui | |
| - shell: bash -l {0} | |
| name: Test RosettaSciIO | |
| if: always() | |
| run: | | |
| conda activate "${{ env.install_dir }}" | |
| pytest --pyargs rsciio --reruns 3 -n 2 | |
| - shell: bash -l {0} | |
| name: Test hyperspy | |
| if: always() | |
| run: | | |
| conda activate "${{ env.install_dir }}" | |
| pytest --pyargs hyperspy --reruns 3 -n 2 | |
| - shell: bash -l {0} | |
| name: Test hyperspy_gui_ipywidgets | |
| if: always() | |
| run: | | |
| conda activate "${{ env.install_dir }}" | |
| pytest --pyargs hyperspy_gui_ipywidgets | |
| - shell: bash -l {0} | |
| name: Test hyperspy_gui_traitsui | |
| if: runner.os != 'linux' && always() | |
| run: | | |
| conda activate "${{ env.install_dir }}" | |
| # test_image_contrast_tool not supported with agg backend | |
| pytest --pyargs hyperspy_gui_traitsui -k "not test_image_contrast_tool" | |
| - shell: bash -l {0} | |
| name: Run test exspy | |
| if: always() | |
| run: | | |
| conda activate "${{ env.install_dir }}" | |
| pytest --pyargs exspy | |
| - shell: bash -l {0} | |
| name: Run test holospy | |
| if: always() | |
| run: | | |
| conda activate "${{ env.install_dir }}" | |
| pytest --pyargs holospy | |
| - shell: bash -l {0} | |
| name: Run test lumispy | |
| if: always() | |
| run: | | |
| conda activate "${{ env.install_dir }}" | |
| pytest --pyargs lumispy | |
| - shell: bash -l {0} | |
| name: Run test pyxem | |
| if: always() | |
| run: | | |
| conda activate "${{ env.install_dir }}" | |
| # cause of the TestAddEllipseArrayAsMarkers failure is unknown (seems to be on blas mkl only) | |
| pytest --pyargs pyxem -k "not TestAddEllipseArrayAsMarkers" | |
| - shell: bash -l {0} | |
| name: Run test atomap | |
| if: always() | |
| run: | | |
| conda activate "${{ env.install_dir }}" | |
| # Skip interactive test | |
| pytest --pyargs atomap -k "not TestSelectAtomsWithGui" | |
| # - shell: bash -l {0} | |
| # name: Run test kikuchipy | |
| # if: always() | |
| # env: | |
| # MPLBACKEND: 'agg' | |
| # run: | | |
| # conda activate "${{ env.install_dir }}" | |
| # pytest --pyargs kikuchipy | |
| - name: Upload Release Asset | |
| if: startsWith(github.ref, 'refs/tags/') | |
| uses: softprops/action-gh-release@c062e08bd532815e2082a85e87e3ef29c3e6d191 | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| with: | |
| files: ${{ env.asset_name }} | |
| draft: true | |
| build_portable: | |
| name: windows (Portable) | |
| needs: create_release_job | |
| runs-on: windows-latest | |
| env: | |
| WP_URL: https://github.com/winpython/winpython/releases/download/7.1.20240203final/Winpython64-3.11.8.0.exe | |
| WP_SHA256: 0fa1bad92e7287632ce6c32c263c694b109b714b5d12e56063b2cd4281a71f7c | |
| WP_EXE: winpython.exe | |
| WP_DIR_NAME: WPy64-31180 | |
| #LIB_TO_INSTALL: abtem ase atomap exspy graphviz holospy hdf5plugin hyperspy[all] hyperspyui kikuchipy lumispy matplotlib-scalebar nglview particlespy py4dstem pymatgen pystackreg python-rapidjson pyxem scanning_drift_corr start_jupyter_cm | |
| LIB_TO_INSTALL: abtem ase atomap dask-image exspy graphviz holospy hdf5plugin hyperspy[all] hyperspyui lumispy matplotlib-scalebar nglview particlespy py4dstem pymatgen pystackreg python-rapidjson pyxem scanning_drift_corr start_jupyter_cm | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Download Winpython | |
| run: | | |
| Invoke-WebRequest -OutFile ${{ env.WP_EXE }} ${{ env.WP_URL }} | |
| ls | |
| $file_hash = (Get-FileHash ${{ env.WP_EXE }} ).Hash | |
| $file_hash | |
| if ($file_hash -ne "${{ env.WP_SHA256 }}") { exit(1) } | |
| - name: Install Winpython | |
| run: | | |
| .\${{ env.WP_EXE }} -y | Out-Null | |
| ls | |
| ls ${{ env.WP_DIR_NAME }} | |
| - name: Install libraries | |
| shell: cmd | |
| run: | | |
| call "${{ env.WP_DIR_NAME }}\scripts\env.bat" | |
| where python | |
| where pip | |
| pip install ${{ env.LIB_TO_INSTALL }} | |
| # workaround for imageio / pillow incompatiblity? | |
| pip install --upgrade imageio | |
| - name: Pip list | |
| shell: cmd | |
| run: | | |
| call "${{ env.WP_DIR_NAME }}\scripts\env.bat" | |
| pip list | |
| - shell: bash -l {0} | |
| name: Set installer name | |
| env: | |
| VERSION: ${{ needs.create_release_job.outputs.VERSION }} | |
| run: | | |
| installer_name=HyperSpy-bundle-${{ env.VERSION }}-Windows-x86_64-Portable.exe | |
| echo "asset_name=$installer_name" >> $GITHUB_ENV | |
| echo $installer_name | |
| - name: Run pyclean in distribution folder | |
| shell: cmd | |
| run: | | |
| where pip | |
| pip install pyclean | |
| where pyclean | |
| pyclean ${{ env.WP_DIR_NAME }} | |
| - name: Create installer | |
| run: | | |
| 7z -mx5 -sfx a ${{ env.asset_name }} ${{ env.WP_DIR_NAME }} | |
| ls | |
| - name: Upload artifact | |
| if: startsWith(github.ref, 'refs/tags/') != true | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| path: ${{ env.asset_name }} | |
| name: ${{ env.asset_name }} | |
| - name: Install new distribution | |
| run: | | |
| Remove-Item -recurse ${{ env.WP_DIR_NAME }} | |
| ls | |
| .\${{ env.asset_name }} -y | Out-Null | |
| echo "After installation" | |
| ls | |
| echo ${{ env.asset_name }} | |
| - name: Check latest available hyperspy version | |
| shell: cmd | |
| run: | | |
| call "${{ env.WP_DIR_NAME }}\scripts\env.bat" | |
| python check_hyperspy_latest.py | |
| - name: Install testing libraries | |
| if: always() | |
| shell: cmd | |
| run: | | |
| call "${{ env.WP_DIR_NAME }}\scripts\env.bat" | |
| pip install ${{ env.TEST_DEPS }} | |
| - name: Run test suite (HyperSpyUI) | |
| if: always() | |
| shell: cmd | |
| run: | | |
| call "${{ env.WP_DIR_NAME }}\scripts\env.bat" | |
| pytest --pyargs hyperspyui | |
| - name: Run test hyperspy | |
| if: always() | |
| shell: cmd | |
| run: | | |
| call "${{ env.WP_DIR_NAME }}\scripts\env.bat" | |
| pytest --pyargs hyperspy --reruns 3 -n 2 | |
| - name: Run test RosettaSciIO | |
| if: always() | |
| shell: cmd | |
| run: | | |
| call "${{ env.WP_DIR_NAME }}\scripts\env.bat" | |
| pytest --pyargs rsciio --reruns 3 -n 2 | |
| - name: Run test hyperspy_gui_ipywidgets | |
| if: always() | |
| shell: cmd | |
| run: | | |
| call "${{ env.WP_DIR_NAME }}\scripts\env.bat" | |
| pytest --pyargs hyperspy_gui_ipywidgets | |
| - name: Run test hyperspy_gui_traitsui --reruns 3 | |
| if: always() | |
| shell: cmd | |
| run: | | |
| call "${{ env.WP_DIR_NAME }}\scripts\env.bat" | |
| # test_image_contrast_tool not supported with agg backend | |
| pytest --pyargs hyperspy_gui_traitsui -k "not test_image_contrast_tool" | |
| - name: Run test exspy | |
| if: always() | |
| shell: cmd | |
| run: | | |
| call "${{ env.WP_DIR_NAME }}\scripts\env.bat" | |
| pytest --pyargs exspy | |
| - name: Run test holospy | |
| if: always() | |
| shell: cmd | |
| run: | | |
| call "${{ env.WP_DIR_NAME }}\scripts\env.bat" | |
| pytest --pyargs holospy | |
| - name: Run test lumispy | |
| if: always() | |
| shell: cmd | |
| run: | | |
| call "${{ env.WP_DIR_NAME }}\scripts\env.bat" | |
| pytest --pyargs lumispy | |
| - name: Run test pyxem | |
| if: always() | |
| shell: cmd | |
| run: | | |
| call "${{ env.WP_DIR_NAME }}\scripts\env.bat" | |
| # cause of the TestAddEllipseArrayAsMarkers failure is unknown (seems to be on blas mkl only) | |
| pytest --pyargs pyxem -k "not TestAddEllipseArrayAsMarkers" | |
| - name: Run test atomap | |
| if: always() | |
| shell: cmd | |
| run: | | |
| call "${{ env.WP_DIR_NAME }}\scripts\env.bat" | |
| # Skip interactive test | |
| pytest --pyargs atomap -k "not TestSelectAtomsWithGui" | |
| # - name: Run test kikuchipy | |
| # if: always() | |
| # shell: cmd | |
| # run: | | |
| # call "${{ env.WP_DIR_NAME }}\scripts\env.bat" | |
| # # Skip these tests until there are fixed | |
| # pytest --pyargs kikuchipy -k "not test_load_with_padding" | |
| - name: Upload Release Asset | |
| if: startsWith(github.ref, 'refs/tags/') | |
| uses: softprops/action-gh-release@c062e08bd532815e2082a85e87e3ef29c3e6d191 | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| with: | |
| files: ${{ env.asset_name }} | |
| draft: true | |
| publish_release_job: | |
| # Set build, build_portable are needed, so that it runs when they are finished | |
| needs: [create_release_job, build, build_portable] | |
| if: startsWith(github.ref, 'refs/tags/') | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Finalise release | |
| # Publish draft release | |
| uses: eregon/publish-release@01df127f5e9a3c26935118e22e738d95b59d10ce | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| with: | |
| release_id: ${{ needs.create_release_job.outputs.ID }} |