Improved query for finding phenotypic features

ejp-rd-vp · Jul 23, 2024 · 0ea1957 · 0ea1957
1 parent 0560631
commit 0ea1957
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Showing 3 changed files with 873 additions and 862 deletions.
diff --git a/SPARQL/scenario_5/question2_b.rq b/SPARQL/scenario_5/question2_b.rq
@@ -3,6 +3,7 @@ PREFIX obo: <http://purl.obolibrary.org/obo/>
 PREFIX sio: <http://semanticscience.org/resource/>
 PREFIX dcterms: <http://purl.org/dc/terms/> 
 PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
+PREFIX xsd: <http://www.w3.org/2001/XMLSchema#>
 
 SELECT ?idvalue ?phenofeatid ?phenofeatlabel
 WHERE {
@@ -19,5 +20,15 @@ WHERE {
                   a obo:NCIT_C16977 .
     ?phenofeat dcterms:identifier ?phenofeatid ;
                rdfs:label ?phenofeatlabel .
+
+    # Find the phenotypic features that are not excluded
+    OPTIONAL {
+        ?phenofeat sio:SIO_000008 ?excluded .
+        ?excluded a obo:HP_0040285 .
+        ?excludedval sio:SIO_000628 ?excluded ;
+     			     sio:SIO_000300 ?excludedlabel . 
+    }
+
+    FILTER (!bound(?excluded) || ?excludedlabel = "false"^^xsd:boolean )
 
 }
diff --git a/nras_matching_phenotypes.png b/nras_matching_phenotypes.png