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chanzuckerberg · Oct 1, 2024 · 0bb19fd · 0bb19fd
1 parent 105c419
commit 0bb19fd
Showing 1 changed file with 2 additions and 0 deletions.
diff --git a/workflows/long-read-mngs/run.wdl b/workflows/long-read-mngs/run.wdl
@@ -1280,6 +1280,8 @@ workflow czid_long_read_mngs {
         String library_type = "RNA"
         String guppy_basecaller_setting = "hac" # fast, hac, super
 
+        # The subsample_depth used to be 4000000 because to get 1 million reads we need to get 
+        # 4 * 1000000 lines. But since we switched to using seqtk, we only need to provide the total number of reads.
         Int subsample_depth = 1000000 
 
         File minimap_host_db