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@cbg-ethz

Computational Biology Group (CBG)

Beerenwinkel Lab at ETH Zurich

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  1. V-pipe V-pipe Public

    V-pipe is a pipeline designed for analysing NGS data of short viral genomes

    Jupyter Notebook 130 46

Repositories

Showing 10 of 98 repositories
  • mixmax Public
    cbg-ethz/mixmax’s past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Oct 30, 2024
  • oncotreeVIS Public
    cbg-ethz/oncotreeVIS’s past year of commit activity
    JavaScript 0 0 0 0 Updated Oct 29, 2024
  • pangolin Public

    BSSE COVID-19 sequencing of test swab samples

    cbg-ethz/pangolin’s past year of commit activity
    Shell 7 3 1 2 Updated Oct 29, 2024
  • oncotree2vec Public
    cbg-ethz/oncotree2vec’s past year of commit activity
    JavaScript 3 0 0 0 Updated Oct 28, 2024
  • Jnotype Public

    Probabilistic modeling of high-dimensional binary data in JAX

    cbg-ethz/Jnotype’s past year of commit activity
    Python 2 MIT 0 6 1 Updated Oct 27, 2024
  • SCITE-RNA Public
    cbg-ethz/SCITE-RNA’s past year of commit activity
    C++ 0 0 0 0 Updated Oct 25, 2024
  • SARS-CoV-2-wastewater-sample-processing-VILOCA Public

    wastewater-sample-processing-VILOCA

    cbg-ethz/SARS-CoV-2-wastewater-sample-processing-VILOCA’s past year of commit activity
    Jupyter Notebook 2 Apache-2.0 1 0 0 Updated Oct 22, 2024
  • mt-SCITE Public

    Tree inference from mitochondrial mutations

    cbg-ethz/mt-SCITE’s past year of commit activity
    Jupyter Notebook 4 1 0 0 Updated Oct 21, 2024
  • viloca_applications Public

    This repo contains applications of the tool VILOCA.

    cbg-ethz/viloca_applications’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Oct 17, 2024
  • VILOCA Public

    VILOCA: VIral LOcal haplotype reconstruction and mutation CAlling for short and long read data

    cbg-ethz/VILOCA’s past year of commit activity
    Python 14 GPL-3.0 0 0 0 Updated Oct 17, 2024
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