Smart-seq2 Single Nucleus Multi-Sample documentation has moved! Read more about the Smart-seq2 Single Nucleus Multi-Sample Pipeline on the new WARP documentation site!
The Smart-seq2 Single Nucleus Multi-Sample Pipeline is a wrapper around the Smart-seq2 Single Nucleus Pipeline. It is designed in collaboration with the BRAIN Initiative Cell Census Network (BICCN) to process single-nucleus RNAseq (snRNAseq) data generated by Smart-seq2 assays. The workflow processes multiple cells by importing and running the Smart-seq2 Single Nucleus Sample workflow for each individual cell and then merging the resulting matrix (Loom format) output files into a single matrix containing intronic and exonic counts as well as quality metrics.