Tools for use with FireCloud

Warning

This repository is deprecated. Use terra-tools instead.

To run a given script using the run script:

To run a giving script using Docker:

docker run --rm -it -v "$HOME"/.config:/.config broadinstitute/firecloud-tools python /scripts/<script name.py> <arguments>

Prerequisites

Install the Google Cloud SDK from https://cloud.google.com/sdk/downloads
Set the Application Default Credentials (run gcloud auth application-default login)
Python 2.7

When running without the run script or docker, check the packages that are pip installed in either run.sh or the Dockerfile.

Name		Name	Last commit message	Last commit date
Latest commit History 79 Commits
create_google_config		create_google_config
scripts		scripts
.git_ignore		.git_ignore
Dockerfile		Dockerfile
LICENSE.txt		LICENSE.txt
README.md		README.md
auth.sh		auth.sh
install.sh		install.sh
run.sh		run.sh