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editorial updates to changelogs (chanzuckerberg#773)
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brianraymor authored Feb 13, 2024
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13 changes: 7 additions & 6 deletions schema/5.0.0/schema.md
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Expand Up @@ -1573,7 +1573,7 @@ When a dataset is uploaded, CELLxGENE Discover MUST automatically add the `schem

## Appendix A. Changelog

schema v5.0.0
### schema v5.0.0

* General Requirements
* Updated requirements to prohibit duplicate data submitter metadata field names in `obs` and `var`
Expand All @@ -1591,9 +1591,9 @@ schema v5.0.0
* **Breaking change**. Updated the requirements for `cell_type_ontology_term_id` to replace `"CL:0000003"` for *native cell* with `"unknown"` to indicate that the cell type is unknown.
* Updated the requirements for `disease_ontology_term_id` to restrict MONDO terms to the most accurate child of `"MONDO:0000001"` for _disease_ or `"MONDO:0021178"` for _injury_ or preferably its most accurate child.
* uns (Dataset metadata)
* Prohibited fields with a size of zero
* Updated requirements. The data stored as a value for a key in `uns` MUST be `True`, `False`, `None`, or its size MUST NOT be zero.

schema v4.0.0
### schema v4.0.0

* Required Ontologies
* Updated CL to the 2023-08-24 release
Expand Down Expand Up @@ -1629,7 +1629,7 @@ schema v4.0.0
* X (Matrix Layers)
* Updated requirements for raw matrices

schema v3.1.0
### schema v3.1.0

* Added section for Schema versioning
* Required Ontologies
Expand All @@ -1656,10 +1656,10 @@ schema v3.1.0
* Updated Seq-Well [EFO:0008919] to Seq-Well [EFO:0008919] and its children
* uns (Dataset metadata)
* `schema_version`
* Must must be annotated by CELLxGENE Discover and not the Curator.
* Must be annotated by CELLxGENE Discover and not the Curator.


schema v3.0.0
### schema v3.0.0

* The canonical data format was updated from AnnData 0.7 to 0.8.
* All references to the "final" matrix has been replaced with "normalized" for clarity.
Expand All @@ -1678,6 +1678,7 @@ schema v3.0.0
* Updated `schema_version`
* Deprecated `X_normalization`

### schema v2.0.0
schema v2.0.0 substantially *remodeled* schema v1.1.0:

* "must", "should", and select other words have a defined, standard meaning.
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12 changes: 7 additions & 5 deletions schema/5.1.0/schema.md
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Expand Up @@ -1854,7 +1854,7 @@ When a dataset is uploaded, CELLxGENE Discover MUST automatically add the `schem

## Appendix A. Changelog

schema v5.1.0
### schema v5.1.0

* General Requirements
* Defined **Visium Single** as *Visium Spatial Gene Expression* datasets that represent one Space Ranger output for a single tissue section.
Expand All @@ -1880,7 +1880,7 @@ schema v5.1.0
* Updated the value of `schema_version` to PENDING
* Added `spatial` for **Visium Single**

schema v5.0.0
### schema v5.0.0

* General Requirements
* Updated requirements to prohibit duplicate data submitter metadata field names in `obs` and `var`
Expand All @@ -1900,7 +1900,7 @@ schema v5.0.0
* uns (Dataset metadata)
* Prohibited fields with a size of zero

schema v4.0.0
### schema v4.0.0

* Required Ontologies
* Updated CL to the 2023-08-24 release
Expand Down Expand Up @@ -1936,7 +1936,7 @@ schema v4.0.0
* X (Matrix Layers)
* Updated requirements for raw matrices

schema v3.1.0
### schema v3.1.0

* Added section for Schema versioning
* Required Ontologies
Expand Down Expand Up @@ -1966,7 +1966,7 @@ schema v3.1.0
* Must be annotated by CELLxGENE Discover and not the Curator.


schema v3.0.0
### schema v3.0.0

* The canonical data format was updated from AnnData 0.7 to 0.8.
* All references to the "final" matrix has been replaced with "normalized" for clarity.
Expand All @@ -1985,6 +1985,8 @@ schema v3.0.0
* Updated `schema_version`
* Deprecated `X_normalization`

### schema v2.0.0

schema v2.0.0 substantially *remodeled* schema v1.1.0:

* "must", "should", and select other words have a defined, standard meaning.
Expand Down

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