Bio2BEL GWAS Catalog

The NHGRI-EBI Catalog of published genome-wide association studies.

Installation

bio2bel_gwascatalog can be installed easily from PyPI with the following code in your favorite terminal:

from the latest code on GitHub with:

$ python3 -m pip install git+https://github.com/bio2bel/gwascatalog.git

Setup

GWAS Catalog can be downloaded and populated from either the Python REPL or the automatically installed command line utility.

Python REPL

>>> import bio2bel_gwascatalog
>>> gwascatalog_manager = bio2bel_gwascatalog.Manager()
>>> gwascatalog_manager.populate()

Command Line Utility

bio2bel_gwascatalog populate