Ftx namespace changes to processors

[Piyush13y]

This PR fixes #87

Description of changes

With reference to changes merged through Forte in PR, we updated the ontology namespace structure. The processors in Forte-wrapper needed to incorporate those updated namespaces. Only SpacyProcessor works with the ftx folder, hence that's the only file that has been updated.

Possible influences of this PR.

Code shouldn't throw Import errors now.

[hunterhector]

Sounds good, let’s address this in another. We can merge this after we fix the mypy runs tomorrow

On Tue, Mar 1, 2022 at 10:02 PM Piyush Yadav ***@***.***> wrote: ***@***.**** commented on this pull request. ------------------------------ In src/spacy/fortex/spacy/spacy_processors.py <#89 (comment)>: > @@ -28,7 +28,7 @@ from forte.data.ontology import Annotation from forte.processors.base import PackProcessor, FixedSizeBatchProcessor from ft.onto.base_ontology import EntityMention, Sentence, Token, Dependency -from ftx.medical.clinical import MedicalEntityMention, UMLSConceptLink +from ftx.onto.clinical import MedicalEntityMention, UMLSConceptLink Got it, I was looking at pretrained_encoder_processor.py but this example is a better one since we will need to set attributes of the class instances. I will be making changes to SpacyProcessor pertaining to this, since we will need to pass both MedicalEntityMention and UMLSConceptLink through config. I am thinking we should have a new issue (which better explains the problem) and PR for this? This particular PR can be pushed as is. — Reply to this email directly, view it on GitHub <#89 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AAHYBNZ2BCCRNMLXGKW54CLU53K2TANCNFSM5PDLKLOA> . Triage notifications on the go with GitHub Mobile for iOS <https://apps.apple.com/app/apple-store/id1477376905?ct=notification-email&mt=8&pt=524675> or Android <https://play.google.com/store/apps/details?id=com.github.android&referrer=utm_campaign%3Dnotification-email%26utm_medium%3Demail%26utm_source%3Dgithub>. You are receiving this because you commented.Message ID: ***@***.***>

-- Hector, Liu Zhengzhong Website: https://hunterhector.github.io/ LinkedIn: http://www.linkedin.com/pub/hector-zhengzhong-liu/23/115/406