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@armbrustlab

Armbrust Lab

Biological Oceanography Lab at the University of Washington

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  1. SEAStAR SEAStAR Public

    SEAStAR is a package of tools supporting the construction of complete analysis pipelines for next-generation (Illumina®, SOLiD™) sequencing data generated from environmental samples.

    C 13 2

  2. flowPhyto flowPhyto Public

    flowPhyto is a package for the R statistical programming language that uses automated computational methods (flowClust and flowMeans) to cluster phytoplankton populations, perform aggregate statist…

    R 3 1

  3. seaflowviz2 seaflowviz2 Public

    SeaFlow realtime data dashboard with Meteor

    JavaScript 3

  4. cytDiv cytDiv Public

    cytoDiv is a R function that calculates ecological diversity indices for a microbial community based on its bio-optical properties measured at the single cell level by flow cytometry. The indices e…

    R 2 2

  5. armbrustlab.github.io armbrustlab.github.io Public

    HTML 2 5

  6. seaflow-realtime-deployment seaflow-realtime-deployment Public

    Shell 2

Repositories

Showing 10 of 23 repositories
  • armbrustlab.github.io Public
    armbrustlab/armbrustlab.github.io’s past year of commit activity
    HTML 2 MIT 5 0 0 Updated Oct 31, 2024
  • NPac_euk_gene_catalog Public

    North Pacific eukaryotic metatranscriptome assemblies and annotations

    armbrustlab/NPac_euk_gene_catalog’s past year of commit activity
    Shell 1 MIT 0 0 0 Updated Oct 24, 2024
  • marferret Public

    Code repository for collection, ingestion, and processing of genomic and transcriptomic sequence data into a reproducible reference sequence database

    armbrustlab/marferret’s past year of commit activity
    Python 2 MIT 0 0 0 Updated Feb 29, 2024
  • seaflow-transfer Public

    SeaFlow data transfer tool

    armbrustlab/seaflow-transfer’s past year of commit activity
    Go 1 MIT 0 1 2 Updated Mar 7, 2023
  • Thaps_Catl Public
    armbrustlab/Thaps_Catl’s past year of commit activity
    R 0 0 0 0 Updated Jun 24, 2022
  • trophic-mode-ml Public

    Accompanying code for 'The dynamic trophic architecture of open-ocean protist communities revealed through machine-guided metatranscriptomics.'

    armbrustlab/trophic-mode-ml’s past year of commit activity
    HTML 2 MIT 0 0 0 Updated Feb 18, 2022
  • seaflow-realtime-deployment Public
    armbrustlab/seaflow-realtime-deployment’s past year of commit activity
    Shell 2 GPL-3.0 0 0 0 Updated Sep 7, 2021
  • cruisereplay Public

    Replay historical data feeds for a research cruise

    armbrustlab/cruisereplay’s past year of commit activity
    Go 0 MIT 0 0 0 Updated Jul 13, 2021
  • diel_eukaryotes Public

    Code repository for 'Diel-regulated transcriptional cascades of microbial eukaryotes in the North Pacific Subtropical Gyre'

    armbrustlab/diel_eukaryotes’s past year of commit activity
    Shell 0 GPL-3.0 0 0 0 Updated Jul 2, 2021
  • gradients-amplicon Public

    Sharing is caring.

    armbrustlab/gradients-amplicon’s past year of commit activity
    R 0 0 0 0 Updated Aug 11, 2020
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