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Updating the PO files for prerelease
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cooperl09 committed Jun 4, 2020
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18 changes: 10 additions & 8 deletions po.obo
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Original file line number Diff line number Diff line change
@@ -1,5 +1,5 @@
format-version: 1.2
data-version: releases/2019-06-05
data-version: releases/2020-06-04
saved-by: cooperl
subsetdef: Angiosperm "Term for angiosperms"
subsetdef: Arabidopsis "Term used for Arabidopsis"
Expand Down Expand Up @@ -2661,7 +2661,7 @@ relationship: part_of PO:0003017 ! root cap of primary root
id: PO:0003022
name: lateral root cap of primary root
namespace: plant_anatomy
def: "A central root cap that is part of a root cap of primary root." [POC:curators, TAIR_curator:Katica_Ilic]
def: "A lateral root cap (PO:0020131) that is part of a root cap (PO:0020123) of a primary root (PO:0020127)." [PO:cooperl, POC:curators, TAIR_curator:Katica_Ilic]
synonym: "caliptra de la ra&#237z lateral de la ra&#237z primaria (Spanish, exact)" EXACT Spanish [POC:Maria_Alejandra_Gandolfo]
synonym: "一次根の側根冠 (Japanese, exact)" EXACT Japanese [NIG:Yukiko_Yamazaki]
xref: PO_GIT:194
Expand All @@ -2688,8 +2688,8 @@ relationship: part_of PO:0009005 ! root
id: PO:0003024
name: stolon
namespace: plant_anatomy
def: "A branch that is slender, prostrate or trailing and above-ground and produces roots and sometimes erect shoots at its nodes." [APweb:Glossary, POC:curators]
comment: The stolon develops from an axillary bud and produces adventitious roots at the nodes and a terminal aerial stem. That stem then sends out one or more stolons from its axillary buds and the process is reiterated. A unique part of this process is that the first internode of a stolon is very long and then the shoot becomes an erect rosette.
def: "A branch (PO:0025073) that is prostrate or trailing, and produces adventitious nodal roots (PO:0003005) and sometimes erect shoots." [APweb:Glossary, POC:curators]
comment: The stolon develops from an axillary bud (PO:0004709) and produces adventitious roots (PO:0003005) at the nodes and a terminal aerial stem. That stem then sends out one or more stolons from its axillary buds and the process is reiterated. Stolons may be above ground, as with strawberries, or below ground as in potatoes.
subset: reference
subset: TraitNet
synonym: "estol&#243n (Spanish, exact)" EXACT Spanish [POC:Maria_Alejandra_Gandolfo]
Expand Down Expand Up @@ -10584,7 +10584,7 @@ name: plant structure development stage
namespace: plant_structure_development_stage
alt_id: PO:0007021
def: "A stage in the life of a plant structure (PO:0009011) during which the plant structure undergoes developmental processes." [BFO:0000003, GO:0032502, POC:curators]
comment: Refers to GO:0032502 'developmental process', which includies growth, differentiation, and senescence, and BFO:0000003 'ocurrent'.
comment: Refers to GO:0032502 'developmental process', which includes growth, differentiation, and senescence, and BFO:0000003 'ocurrent'.
subset: TraitNet
synonym: "Arabidopsis growth (related)" RELATED [TAIR:0000205]
synonym: "etapa de desarrollo de estructura vegetal (Spanish, exact)" EXACT Spanish [POC:Maria_Alejandra_Gandolfo]
Expand Down Expand Up @@ -15023,7 +15023,7 @@ id: PO:0025096
name: carpel epidermis
namespace: plant_anatomy
def: "A portion of phyllome epidermis (PO:0025157) that is part of a carpel (PO:0009030)." [POC:Ramona_Walls]
synonym: "A portion of carpel epidermis (PO:0025096) that covers the abaxial surface of a carpel (PO:0009030). \" (broad)" BROAD []
synonym: "A portion of carpel epidermis (PO:0025096) that covers the abaxial surface of a carpel (PO:0009030). (broad)" BROAD []
synonym: "epidermis del carpelo (Spanish, exact)" EXACT Spanish [POC:Maria_Alejandra_Gandolfo]
synonym: "心皮 表皮 (Japanese, exact)" EXACT Japanese [NIG:Yukiko_Yamazaki]
is_a: PO:0025157 ! phyllome epidermis
Expand Down Expand Up @@ -16634,7 +16634,7 @@ creation_date: 2010-12-17T10:28:52Z
id: PO:0025208
name: carpel trichome
namespace: plant_anatomy
def: "A phyllome trichome that is part of a bract epidermis." [POC:Ramona_Walls]
def: "A phyllome trichome (PO:0025186) that is part of a carpel epidermis (PO:0025096)." [PO:cooperl, POC:Ramona_Walls]
synonym: "tricoma del carpelo (Spanish, exact)" EXACT Spanish [POC:Maria_Alejandra_Gandolfo]
synonym: "心皮毛（毛茸、糸状体） (Japanese, exact)" EXACT Japanese [NIG:Yukiko_Yamazaki]
is_a: PO:0025186 ! phyllome trichome
Expand Down Expand Up @@ -17172,7 +17172,7 @@ id: PO:0025248
name: pseudostem
namespace: plant_anatomy
def: "A collective organ part structure that forms a cylindrical false stem composed concentric leaf sheaths." [POC:Ramona_Walls]
comment: The peduncle later grows up through the psuedostem. Common in Musa species and some other monocots.
comment: The peduncle later grows up through the pseudostem. Common in Musa species and some other monocots.
subset: Musa
synonym: "pseudotallo (Spanish, exact)" EXACT Spanish [POC:Maria_Alejandra_Gandolfo]
synonym: "偽茎 (Japanese, exact)" EXACT Japanese [NIG:Yukiko_Yamazaki]
Expand Down Expand Up @@ -22292,6 +22292,7 @@ creation_date: 2017-08-17T14:41:36Z
[Term]
id: PO:0025622
name: metaxylem vessel member
namespace: plant_anatomy
def: "A primary xylem vessel member (PO:0025448) that is part of the metaxylem (PO:0000372)." [PO:Laurel_Cooper]
synonym: "metaxylem vessel element (exact)" EXACT []
xref: PO_GIT:678
Expand Down Expand Up @@ -23919,6 +23920,7 @@ is_a: PO:0000042 ! shoot-borne root
[Term]
id: PO:0030090
name: root periderm scar
namespace: plant_anatomy
def: "A portion of root periderm (PO:0005047) formed in response to a disruption of the root epidermis (PO:0006036)." [ISBN:0471738433, NYBG:Brandon_Sinn, NYBG:Dario_Cavaliere, PO_REF:00016]
comment: Root periderm scars are lenticel-like structures on the tuberous roots (PO:0025523), primary roots (PO:0020127), and/or tuberous root tubers (PO:0025476) of plants such as sweet potato, cassava, parsnips, and carrots. Disruption of the epidermis by the emergence of a lateral root initiates a wound response which results in the production of a root periderm scar. Gas exchange does not occur through a root periderm scar.
xref: PO_GIT:635
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28 changes: 15 additions & 13 deletions po.owl
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Expand Up @@ -12,7 +12,7 @@
xmlns:swrla="http://swrl.stanford.edu/ontologies/3.3/swrla.owl#"
xmlns:po="http://purl.obolibrary.org/obo/po#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/po.owl">
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/po/releases/2019-06-05/po.owl"/>
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/po/releases/2020-06-04/po.owl"/>
<owl:imports rdf:resource="http://purl.obolibrary.org/obo/po/imports/ro_import.owl"/>
<owl:imports rdf:resource="http://purl.obolibrary.org/obo/po/imports/ncbitaxon_import.owl"/>
<oboInOwl:treat-xrefs-as-genus-differentia rdf:datatype="http://www.w3.org/2001/XMLSchema#string">CL part_of NCBITaxon:33090</oboInOwl:treat-xrefs-as-genus-differentia>
Expand Down Expand Up @@ -8986,7 +8986,7 @@
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/PO_0003017"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A central root cap that is part of a root cap of primary root.</obo:IAO_0000115>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A lateral root cap (PO:0020131) that is part of a root cap (PO:0020123) of a primary root (PO:0020127).</obo:IAO_0000115>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PO_GIT:194</oboInOwl:hasDbXref>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">caliptra de la ra&amp;#237z lateral de la ra&amp;#237z primaria (Spanish, exact)</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">一次根の側根冠 (Japanese, exact)</oboInOwl:hasExactSynonym>
Expand All @@ -8997,7 +8997,8 @@
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/PO_0003022"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A central root cap that is part of a root cap of primary root.</owl:annotatedTarget>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A lateral root cap (PO:0020131) that is part of a root cap (PO:0020123) of a primary root (PO:0020127).</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PO:cooperl</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">POC:curators</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">TAIR_curator:Katica_Ilic</oboInOwl:hasDbXref>
</owl:Axiom>
Expand Down Expand Up @@ -9079,7 +9080,7 @@

<owl:Class rdf:about="http://purl.obolibrary.org/obo/PO_0003024">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PO_0025073"/>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A branch that is slender, prostrate or trailing and above-ground and produces roots and sometimes erect shoots at its nodes.</obo:IAO_0000115>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A branch (PO:0025073) that is prostrate or trailing, and produces adventitious nodal roots (PO:0003005) and sometimes erect shoots.</obo:IAO_0000115>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PO_GIT:388</oboInOwl:hasDbXref>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">estol&amp;#243n (Spanish, exact)</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ストロン、ほふく茎 (Japanese, exact)</oboInOwl:hasExactSynonym>
Expand All @@ -9088,13 +9089,13 @@
<oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PO:0003024</oboInOwl:id>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/po#TraitNet"/>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/po#reference"/>
<rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">The stolon develops from an axillary bud and produces adventitious roots at the nodes and a terminal aerial stem. That stem then sends out one or more stolons from its axillary buds and the process is reiterated. A unique part of this process is that the first internode of a stolon is very long and then the shoot becomes an erect rosette.</rdfs:comment>
<rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">The stolon develops from an axillary bud (PO:0004709) and produces adventitious roots (PO:0003005) at the nodes and a terminal aerial stem. That stem then sends out one or more stolons from its axillary buds and the process is reiterated. Stolons may be above ground, as with strawberries, or below ground as in potatoes.</rdfs:comment>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">stolon</rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/PO_0003024"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A branch that is slender, prostrate or trailing and above-ground and produces roots and sometimes erect shoots at its nodes.</owl:annotatedTarget>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A branch (PO:0025073) that is prostrate or trailing, and produces adventitious nodal roots (PO:0003005) and sometimes erect shoots.</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">APweb:Glossary</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">POC:curators</oboInOwl:hasDbXref>
</owl:Axiom>
Expand Down Expand Up @@ -38217,7 +38218,7 @@
<oboInOwl:hasRelatedSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Arabidopsis growth (related)</oboInOwl:hasRelatedSynonym>
<oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PO:0009012</oboInOwl:id>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/po#TraitNet"/>
<rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Refers to GO:0032502 &apos;developmental process&apos;, which includies growth, differentiation, and senescence, and BFO:0000003 &apos;ocurrent&apos;.</rdfs:comment>
<rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Refers to GO:0032502 &apos;developmental process&apos;, which includes growth, differentiation, and senescence, and BFO:0000003 &apos;ocurrent&apos;.</rdfs:comment>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">plant structure development stage</rdfs:label>
</owl:Class>
<owl:Axiom>
Expand Down Expand Up @@ -52680,7 +52681,7 @@
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A portion of phyllome epidermis (PO:0025157) that is part of a carpel (PO:0009030).</obo:IAO_0000115>
<oboInOwl:created_by rdf:datatype="http://www.w3.org/2001/XMLSchema#string">rwalls</oboInOwl:created_by>
<oboInOwl:creation_date rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2010-12-17T12:36:46Z</oboInOwl:creation_date>
<oboInOwl:hasBroadSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A portion of carpel epidermis (PO:0025096) that covers the abaxial surface of a carpel (PO:0009030). &quot; (broad)</oboInOwl:hasBroadSynonym>
<oboInOwl:hasBroadSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A portion of carpel epidermis (PO:0025096) that covers the abaxial surface of a carpel (PO:0009030). (broad)</oboInOwl:hasBroadSynonym>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">epidermis del carpelo (Spanish, exact)</oboInOwl:hasExactSynonym>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">心皮 表皮 (Japanese, exact)</oboInOwl:hasExactSynonym>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">plant_anatomy</oboInOwl:hasOBONamespace>
Expand Down Expand Up @@ -58003,7 +58004,7 @@
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/PO_0025096"/>
</owl:Restriction>
</rdfs:subClassOf>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A phyllome trichome that is part of a bract epidermis.</obo:IAO_0000115>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A phyllome trichome (PO:0025186) that is part of a carpel epidermis (PO:0025096).</obo:IAO_0000115>
<oboInOwl:created_by rdf:datatype="http://www.w3.org/2001/XMLSchema#string">rwalls</oboInOwl:created_by>
<oboInOwl:creation_date rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2010-12-17T02:04:36Z</oboInOwl:creation_date>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">tricoma del carpelo (Spanish, exact)</oboInOwl:hasExactSynonym>
Expand All @@ -58015,7 +58016,8 @@
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/PO_0025208"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A phyllome trichome that is part of a bract epidermis.</owl:annotatedTarget>
<owl:annotatedTarget rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A phyllome trichome (PO:0025186) that is part of a carpel epidermis (PO:0025096).</owl:annotatedTarget>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PO:cooperl</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">POC:Ramona_Walls</oboInOwl:hasDbXref>
</owl:Axiom>
<owl:Axiom>
Expand Down Expand Up @@ -59700,7 +59702,7 @@
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">plant_anatomy</oboInOwl:hasOBONamespace>
<oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PO:0025248</oboInOwl:id>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/po#Musa"/>
<rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">The peduncle later grows up through the psuedostem. Common in Musa species and some other monocots.</rdfs:comment>
<rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">The peduncle later grows up through the pseudostem. Common in Musa species and some other monocots.</rdfs:comment>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">pseudostem</rdfs:label>
</owl:Class>
<owl:Axiom>
Expand Down Expand Up @@ -74723,7 +74725,7 @@ these may not begin or end simultaneously. Not all seeds go through a seed dorma
<oboInOwl:creation_date rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2017-08-17T14:41:36Z</oboInOwl:creation_date>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PO_GIT:678</oboInOwl:hasDbXref>
<oboInOwl:hasExactSynonym rdf:datatype="http://www.w3.org/2001/XMLSchema#string">metaxylem vessel element (exact)</oboInOwl:hasExactSynonym>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">plant_ontology</oboInOwl:hasOBONamespace>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">plant_anatomy</oboInOwl:hasOBONamespace>
<oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PO:0025622</oboInOwl:id>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">metaxylem vessel member</rdfs:label>
</owl:Class>
Expand Down Expand Up @@ -79236,7 +79238,7 @@ these may not begin or end simultaneously. Not all seeds go through a seed dorma
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PO_0005047"/>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A portion of root periderm (PO:0005047) formed in response to a disruption of the root epidermis (PO:0006036).</obo:IAO_0000115>
<oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PO_GIT:635</oboInOwl:hasDbXref>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">plant_ontology</oboInOwl:hasOBONamespace>
<oboInOwl:hasOBONamespace rdf:datatype="http://www.w3.org/2001/XMLSchema#string">plant_anatomy</oboInOwl:hasOBONamespace>
<oboInOwl:id rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PO:0030090</oboInOwl:id>
<rdfs:comment rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Root periderm scars are lenticel-like structures on the tuberous roots (PO:0025523), primary roots (PO:0020127), and/or tuberous root tubers (PO:0025476) of plants such as sweet potato, cassava, parsnips, and carrots. Disruption of the epidermis by the emergence of a lateral root initiates a wound response which results in the production of a root periderm scar. Gas exchange does not occur through a root periderm scar.</rdfs:comment>
<rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">root periderm scar</rdfs:label>
Expand Down
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