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<Lems> | ||
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<!-- | ||
This LEMS file has been automatically generated using PyNeuroML v1.2.13 (libNeuroML v0.5.9) | ||
--> | ||
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<!-- Specify which component to run --> | ||
<Target component="329321704"/> | ||
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<!-- Include core NeuroML2 ComponentType definitions --> | ||
<Include file="Cells.xml"/> | ||
<Include file="Networks.xml"/> | ||
<Include file="Simulation.xml"/> | ||
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<Include file="Network_329321704.net.nml"/> | ||
<Include file="Cell_329321704.cell.nml"/> | ||
<Include file="Im.channel.nml"/> | ||
<Include file="Ih.channel.nml"/> | ||
<Include file="NaTs.channel.nml"/> | ||
<Include file="Nap.channel.nml"/> | ||
<Include file="K_P.channel.nml"/> | ||
<Include file="K_T.channel.nml"/> | ||
<Include file="SK.channel.nml"/> | ||
<Include file="Kv3_1.channel.nml"/> | ||
<Include file="pas.channel.nml"/> | ||
<Include file="Ca_HVA.channel.nml"/> | ||
<Include file="Ca_LVA.channel.nml"/> | ||
<Include file="CaDynamics_all.nml"/> | ||
<Include file="CaDynamics.nml"/> | ||
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<Simulation id="329321704" length="2500.0ms" step="0.005ms" target="network" seed="12345"> <!-- Note seed: ensures same random numbers used every run --> | ||
<Display id="DispPop__Pop_Cell_329321704" title="Membrane potentials of cells in Pop_Cell_329321704" timeScale="1ms" xmin="-250.0" xmax="2750.0" ymin="-90" ymax="50"> | ||
<Line id="Pop_Cell_329321704[0]: v" quantity="Pop_Cell_329321704/0/Cell_329321704/v" scale="1mV" color="#e1a7b4" timeScale="1ms"/> | ||
</Display> | ||
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<OutputFile id="Volts_file__Pop_Cell_329321704" fileName="329321704.Pop_Cell_329321704.v.dat"> | ||
<OutputColumn id="v_Pop_Cell_329321704_0_Cell_329321704_v" quantity="Pop_Cell_329321704/0/Cell_329321704/v"/> | ||
</OutputFile> | ||
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</Simulation> | ||
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</Lems> |
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<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.xsd" id="NeuroML2_file_exported_from_NEURON"> | ||
<notes> | ||
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Export of a cell model (329321704) obtained from the Allen Institute Cell Types Database into NeuroML2 | ||
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Electrophysiology on which this model is based: http://celltypes.brain-map.org/mouse/experiment/electrophysiology/320207387 | ||
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****************************************************** | ||
* This export to NeuroML2 has not yet been fully validated!! | ||
* Use with caution!! | ||
****************************************************** | ||
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</notes> | ||
<property tag="AIBS:aibs_dendrite_type" value="spiny"/> | ||
<property tag="AIBS:aibs_cre_line" value="Scnn1a-Tg3-Cre"/> | ||
<property tag="AIBS:aibs_specimen_id" value="320207387"/> | ||
<property tag="AIBS:aibs_specimen_name" value="Scnn1a-Tg3-Cre;Ai14-170426.03.01.01"/> | ||
<property tag="AIBS:intracellular_ephys:Electrode 1:location" value="Primary visual area, layer 4"/> | ||
<property tag="AIBS:session_id" value="320207381"/> | ||
<property tag="AIBS:subject:age" value="P58"/> | ||
<property tag="AIBS:subject:description" value="Mus musculus In Vitro"/> | ||
<property tag="AIBS:subject:genotype" value="Ai14(RCL-tdT); Scnn1a-Tg3-Cre"/> | ||
<property tag="AIBS:subject:sex" value="M"/> | ||
<property tag="AIBS:subject:species" value="Mus musculus"/> | ||
<include href="Cell_329321704.cell.nml"/> | ||
<pulseGenerator id="stim" delay="1020ms" duration="1000ms" amplitude="200pA"/> | ||
<network id="network" type="networkWithTemperature" temperature="34 degC"> | ||
<property tag="recommended_duration_ms" value="2500"/> | ||
<property tag="recommended_dt_ms" value="0.005"/> | ||
<population id="Pop_Cell_329321704" component="Cell_329321704" size="1" type="populationList"> | ||
<instance id="0"> | ||
<location x="0.0" y="0.0" z="0.0"/> | ||
</instance> | ||
</population> | ||
<inputList id="stim_input" population="Pop_Cell_329321704" component="stim"> | ||
<input id="0" target="../Pop_Cell_329321704/0/Cell_329321704" destination="synapses"/> | ||
</inputList> | ||
</network> | ||
</neuroml> |
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