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Adding more valid cells
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pgleeson committed May 15, 2024
1 parent 0501dee commit 3c20d81
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Showing 127 changed files with 1,630,802 additions and 0 deletions.
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<Lems>

<!--
This LEMS file has been automatically generated using PyNeuroML v1.2.13 (libNeuroML v0.5.9)
-->

<!-- Specify which component to run -->
<Target component="329321704"/>

<!-- Include core NeuroML2 ComponentType definitions -->
<Include file="Cells.xml"/>
<Include file="Networks.xml"/>
<Include file="Simulation.xml"/>

<Include file="Network_329321704.net.nml"/>
<Include file="Cell_329321704.cell.nml"/>
<Include file="Im.channel.nml"/>
<Include file="Ih.channel.nml"/>
<Include file="NaTs.channel.nml"/>
<Include file="Nap.channel.nml"/>
<Include file="K_P.channel.nml"/>
<Include file="K_T.channel.nml"/>
<Include file="SK.channel.nml"/>
<Include file="Kv3_1.channel.nml"/>
<Include file="pas.channel.nml"/>
<Include file="Ca_HVA.channel.nml"/>
<Include file="Ca_LVA.channel.nml"/>
<Include file="CaDynamics_all.nml"/>
<Include file="CaDynamics.nml"/>

<Simulation id="329321704" length="2500.0ms" step="0.005ms" target="network" seed="12345"> <!-- Note seed: ensures same random numbers used every run -->
<Display id="DispPop__Pop_Cell_329321704" title="Membrane potentials of cells in Pop_Cell_329321704" timeScale="1ms" xmin="-250.0" xmax="2750.0" ymin="-90" ymax="50">
<Line id="Pop_Cell_329321704[0]: v" quantity="Pop_Cell_329321704/0/Cell_329321704/v" scale="1mV" color="#e1a7b4" timeScale="1ms"/>
</Display>

<OutputFile id="Volts_file__Pop_Cell_329321704" fileName="329321704.Pop_Cell_329321704.v.dat">
<OutputColumn id="v_Pop_Cell_329321704_0_Cell_329321704_v" quantity="Pop_Cell_329321704/0/Cell_329321704/v"/>
</OutputFile>

</Simulation>

</Lems>
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<neuroml xmlns="http://www.neuroml.org/schema/neuroml2" xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.xsd" id="NeuroML2_file_exported_from_NEURON">
<notes>

Export of a cell model (329321704) obtained from the Allen Institute Cell Types Database into NeuroML2

Electrophysiology on which this model is based: http://celltypes.brain-map.org/mouse/experiment/electrophysiology/320207387

******************************************************
* This export to NeuroML2 has not yet been fully validated!!
* Use with caution!!
******************************************************

</notes>
<property tag="AIBS:aibs_dendrite_type" value="spiny"/>
<property tag="AIBS:aibs_cre_line" value="Scnn1a-Tg3-Cre"/>
<property tag="AIBS:aibs_specimen_id" value="320207387"/>
<property tag="AIBS:aibs_specimen_name" value="Scnn1a-Tg3-Cre;Ai14-170426.03.01.01"/>
<property tag="AIBS:intracellular_ephys:Electrode 1:location" value="Primary visual area, layer 4"/>
<property tag="AIBS:session_id" value="320207381"/>
<property tag="AIBS:subject:age" value="P58"/>
<property tag="AIBS:subject:description" value="Mus musculus In Vitro"/>
<property tag="AIBS:subject:genotype" value="Ai14(RCL-tdT); Scnn1a-Tg3-Cre"/>
<property tag="AIBS:subject:sex" value="M"/>
<property tag="AIBS:subject:species" value="Mus musculus"/>
<include href="Cell_329321704.cell.nml"/>
<pulseGenerator id="stim" delay="1020ms" duration="1000ms" amplitude="200pA"/>
<network id="network" type="networkWithTemperature" temperature="34 degC">
<property tag="recommended_duration_ms" value="2500"/>
<property tag="recommended_dt_ms" value="0.005"/>
<population id="Pop_Cell_329321704" component="Cell_329321704" size="1" type="populationList">
<instance id="0">
<location x="0.0" y="0.0" z="0.0"/>
</instance>
</population>
<inputList id="stim_input" population="Pop_Cell_329321704" component="stim">
<input id="0" target="../Pop_Cell_329321704/0/Cell_329321704" destination="synapses"/>
</inputList>
</network>
</neuroml>
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