Skip to content

LPhy v1.4.1
Compare
Choose a tag to compare
@walterxie walterxie released this 04 Apr 23:13
· 750 commits to master since this release
1.4.1
54d6455

Documentation: https://github.com/LinguaPhylo/linguaPhylo/blob/1.4.1-docs/lphy/doc/index.md
Setup instructions: https://linguaphylo.github.io/setup/

New features:

  • User friendly installer #274
  • Add sort function #280
  • Implement Map viewer #290
  • Add output to simulate function to log true values #291
  • Generation of a single sequence as root sequence #296
  • Add save alignment dropdown to File menu #297
  • Command line simulator #301
  • History buffer in console #304
  • Colorblind friendly palette #305
  • Create scripts for command line #308

Bug fixes and improvements:

  • Improve the example scripts #218
  • Improve LPhy studio menu #252
  • Improve error message in constructGenerator #268
  • Set working dir in unit test not working in jcCoal.lphy #269
  • Gradle run not set user.dir #270
  • Sampling a fraction of sites and then duplicating alignments #275
  • Exception when 'round' function returned Double #276
  • NullPointerException: String.startsWith(String) #277
  • FileSystemNotFoundException #282
  • Simulate function sample twice #283
  • Sample bug to break graphical model #285
  • Issues at simulate function #287
  • The alignment clamped should show the clamped data, not simulated data #289
  • Vertical JSplitPane's bar hangs when the studio is empty #293
  • Alignment tab in LPhyStudio should not be editable #298
  • Tutorial in menu is confusing #303
  • Confusing narratives for PhyloCTMC #311
  • Repeated the in narrative of datatypes #314
  • Add license for Oracle toolbar icons #315
  • Update readme with new colors #317
  • Split the lphy.graphicalModel.Utils into 2 classes #324
Assets 5
Loading