LPhy v1.3.1
Require Java 17. The project has been migrated to a Gradle project.
Download and unzip the Zip file, and use the following command line to launch LPhy Studio in the directory.
java -p lib -m lphystudio
where -p declares your module path which includes the jar file of LPhy Studio and the lib folder under the jar file to contain all required libraries. You can replace your lib folder to a different path. -m declares the module name and it should be always "lphystudio".
If you are using any extensions, copy it into the lib folder and then launch LPhy Studio.
Alternatively launch Model Guide from the command line:
java -p lib -m lphystudio/lphystudio.app.ModelGuideApp
The available functions and models: https://github.com/LinguaPhylo/linguaPhylo/blob/1.3.1/lphy/doc/index.md
Critical change:
- H5N1 tutorial should use D_trait.canonicalStateCount() #221
Bug fixes and new features: