Merge pull request #17 from simonschoelly/split_into_submodules

Split GraphIO into submodules

REQUIRE

@@ -1,7 +1,4 @@
 julia 0.7
-LightGraphs 0.9.5
-EzXML 0.9.0
-ParserCombinator 2.0.0
-#JLD
+LightGraphs 1.1.0
 SimpleTraits
-CodecZlib
+Requires

src/cdf.jl → src/CDF/Cdf.jl

@@ -1,7 +1,17 @@
+module CDF
+
 # loads a graph from a IEEE CDF file.
 # http://www2.ee.washington.edu/research/pstca/formats/cdf.txt
 # http://www2.ee.washington.edu/research/pstca/pf30/ieee30cdf.txt
 
+using LightGraphs
+using LightGraphs: AbstractGraphFormat
+
+import LightGraphs: loadgraph, loadgraphs, savegraph
+
+export CDFFormat
+
+
 struct CDFFormat <: AbstractGraphFormat end
 
 function _loadcdf(io::IO)
@@ -45,3 +55,5 @@ end
 loadcdf(io::IO, gname::String) = _loadcdf(io)
 loadgraph(io::IO, gname::String, ::CDFFormat) = loadcdf(io, gname)
 loadgraphs(io::IO, ::CDFFormat) = Dict("graph" => loadcdf(io, "graph"))
+
+end # module

src/dot.jl → src/DOT/Dot.jl

@@ -1,17 +1,26 @@
+module DOT
+
+using GraphIO.ParserCombinator.Parsers
+using LightGraphs
+using LightGraphs: AbstractGraphFormat
+
+import LightGraphs: loadgraph, loadgraphs
+
+export DOTFormat
 
 struct DOTFormat <: AbstractGraphFormat end
 # TODO: implement save
 
-function _dot_read_one_graph(pg::DOT.Graph)
+function _dot_read_one_graph(pg::Parsers.DOT.Graph)
     isdir = pg.directed
-    nvg = length(DOT.nodes(pg))
-    nodedict = Dict(zip(collect(DOT.nodes(pg)), 1:nvg))
+    nvg = length(Parsers.DOT.nodes(pg))
+    nodedict = Dict(zip(collect(Parsers.DOT.nodes(pg)), 1:nvg))
     if isdir
         g = LightGraphs.DiGraph(nvg)
     else
         g = LightGraphs.Graph(nvg)
     end
-    for es in DOT.edges(pg)
+    for es in Parsers.DOT.edges(pg)
         s = nodedict[es[1]]
         d = nodedict[es[2]]
         add_edge!(g, s, d)
@@ -20,24 +29,24 @@ function _dot_read_one_graph(pg::DOT.Graph)
 end
 
 function loaddot(io::IO, gname::String)
-    p = DOT.parse_dot(read(io, String))
+    p = Parsers.DOT.parse_dot(read(io, String))
     for pg in p
         isdir = pg.directed
-        possname = isdir ? DOT.StringID("digraph") : DOT.StringID("graph")
+        possname = isdir ? Parsers.DOT.StringID("digraph") : Parsers.DOT.StringID("graph")
         name = get(pg.id, possname).id
         name == gname && return _dot_read_one_graph(pg)
     end
     error("Graph $gname not found")
 end
 
 function loaddot_mult(io::IO)
-    p = DOT.parse_dot(read(io, String))
+    p = Parsers.DOT.parse_dot(read(io, String))
 
-    graphs = Dict{String,LightGraphs.AbstractGraph}()
+    graphs = Dict{String,AbstractGraph}()
 
     for pg in p
         isdir = pg.directed
-        possname = isdir ? DOT.StringID("digraph") : DOT.StringID("graph")
+        possname = isdir ? Parsers.DOT.StringID("digraph") : Parsers.DOT.StringID("graph")
         name = get(pg.id, possname).id
         graphs[name] = _dot_read_one_graph(pg)
     end
@@ -46,3 +55,5 @@ end
 
 loadgraph(io::IO, gname::String, ::DOTFormat) = loaddot(io, gname)
 loadgraphs(io::IO, ::DOTFormat) = loaddot_mult(io)
+
+end #module

src/edgelist.jl → src/Edgelist/Edgelist.jl

@@ -1,8 +1,17 @@
+module EdgeList
+
 # loads a graph from an edge list format (list of srcs and dsts separated
 # by commas or whitespace. Will only read the first two elements on
 # each line. Will return a directed graph.
 
 using DelimitedFiles: writedlm
+using LightGraphs
+using LightGraphs: AbstractGraphFormat
+
+import LightGraphs: loadgraph, loadgraphs, savegraph
+
+export EdgeListFormat
+
 
 struct EdgeListFormat <: AbstractGraphFormat end
 
@@ -42,3 +51,5 @@ end
 loadgraph(io::IO, gname::String, ::EdgeListFormat) = loadedgelist(io, gname)
 loadgraphs(io::IO, ::EdgeListFormat) = Dict("graph" => loadedgelist(io, "graph"))
 savegraph(io::IO, g::AbstractGraph, gname::String, ::EdgeListFormat) = saveedgelist(io, g, gname)
+
+end

src/gexf.jl → src/GEXF/Gexf.jl

@@ -1,3 +1,12 @@
+module GEXF
+
+using GraphIO.EzXML
+using LightGraphs
+using LightGraphs: AbstractGraph, AbstractGraphFormat
+
+import LightGraphs: savegraph
+
+export GEXFFormat 
 
 # TODO: implement readgexf
 struct GEXFFormat <: AbstractGraphFormat end
@@ -42,3 +51,5 @@ function savegexf(io::IO, g::LightGraphs.AbstractGraph, gname::String)
 end
 
 savegraph(io::IO, g::AbstractGraph, gname::String, ::GEXFFormat) = savegexf(io, g, gname)
+
+end #module

src/gml.jl → src/GML/Gml.jl

@@ -1,3 +1,14 @@
+module GML
+
+using GraphIO.ParserCombinator.Parsers
+using LightGraphs
+using LightGraphs: AbstractGraphFormat
+
+import LightGraphs: loadgraph, loadgraphs, savegraph
+
+export GMLFormat
+
+
 struct GMLFormat <: AbstractGraphFormat end
 
 function _gml_read_one_graph(gs, dir)
@@ -19,7 +30,7 @@ function _gml_read_one_graph(gs, dir)
 end
 
 function loadgml(io::IO, gname::String)
-    p = GML.parse_dict(read(io, String))
+    p = Parsers.GML.parse_dict(read(io, String))
     for gs in p[:graph]
         dir = Bool(get(gs, :directed, 0))
         graphname = get(gs, :label, dir ? "digraph" : "graph")
@@ -30,7 +41,7 @@ function loadgml(io::IO, gname::String)
 end
 
 function loadgml_mult(io::IO)
-    p = GML.parse_dict(read(io, String))
+    p = Parsers.GML.parse_dict(read(io, String))
     graphs = Dict{String,LightGraphs.AbstractGraph}()
     for gs in p[:graph]
         dir = Bool(get(gs, :directed, 0))
@@ -85,3 +96,5 @@ loadgraph(io::IO, gname::String, ::GMLFormat) = loadgml(io, gname)
 loadgraphs(io::IO, ::GMLFormat) = loadgml_mult(io)
 savegraph(io::IO, g::AbstractGraph, gname::String, ::GMLFormat) = savegml(io, g, gname)
 savegraph(io::IO, d::Dict, ::GMLFormat) = savegml_mult(io, d)
+
+end # module

src/graph6.jl → src/Graph6/Graph6.jl

@@ -1,3 +1,13 @@
+module Graph6
+
+using SimpleTraits
+using LightGraphs
+using LightGraphs: AbstractGraphFormat
+
+import LightGraphs: loadgraph, loadgraphs, savegraph
+
+export Graph6Format
+
 struct Graph6Format <: AbstractGraphFormat end
 
 function _bv2int(x::BitVector)
@@ -158,3 +168,5 @@ loadgraph(io::IO, gname::String, ::Graph6Format) = loadgraph6(io, gname)
 loadgraphs(io::IO, ::Graph6Format) = loadgraph6_mult(io)
 savegraph(io::IO, g::AbstractGraph, gname::String, ::Graph6Format) = savegraph6(io, g, gname)
 savegraph(io::IO, d::Dict, ::Graph6Format) = savegraph6_mult(io, d)
+
+end # module

src/GraphIO.jl

@@ -1,28 +1,31 @@
 module GraphIO
 
-using LightGraphs
-using SimpleTraits
+using Requires
 
-import LightGraphs: loadgraph, loadgraphs, savegraph, AbstractGraphFormat
-using EzXML
-using ParserCombinator.Parsers.DOT
-using ParserCombinator.Parsers.GML
-using CodecZlib
+#=
+    NOTE: This is a temporary fix until we can have multiple sub-packages with their own 
+    requirements in a single repository.
+=#
+function __init__()
+    @require CodecZlib="944b1d66-785c-5afd-91f1-9de20f533193" begin
+        include("LGCompressed/LGCompressed.jl")
+    end
+    @require EzXML="8f5d6c58-4d21-5cfd-889c-e3ad7ee6a615" begin
+        include("GEXF/Gexf.jl")
+        include("GraphML/GraphML.jl")
+    end
+    @require ParserCombinator="fae87a5f-d1ad-5cf0-8f61-c941e1580b46" begin
+        include("DOT/Dot.jl")
+        include("GML/Gml.jl")
+    end
+end
 
-export DOTFormat, GEXFFormat, GMLFormat, Graph6Format,
-GraphMLFormat, NETFormat, EdgeListFormat, CDFFormat,
-LGCompressedFormat
-# package code goes here
 
-#include("jld.jl")
-include("lgcompressed.jl")
-include("dot.jl")
-include("gexf.jl")
-include("gml.jl")
-include("graph6.jl")
-include("graphml.jl")
-include("net.jl")
-include("edgelist.jl")
-include("cdf.jl")
+include("Graph6/Graph6.jl")
+include("NET/Net.jl")
+include("Edgelist/Edgelist.jl")
+include("CDF/Cdf.jl")
+
+include("deprecations.jl")
 
 end # module

src/graphml.jl → src/GraphML/GraphML.jl

@@ -1,3 +1,14 @@
+module GraphML
+
+using GraphIO.EzXML
+using LightGraphs
+using LightGraphs: AbstractGraphFormat
+
+import LightGraphs: loadgraph, loadgraphs, savegraph
+
+export GraphMLFormat
+
+
 # TODO: implement writing a dict of graphs
 
 struct GraphMLFormat <: AbstractGraphFormat end
@@ -123,3 +134,5 @@ loadgraph(io::IO, gname::String, ::GraphMLFormat) = loadgraphml(io, gname)
 loadgraphs(io::IO, ::GraphMLFormat) = loadgraphml_mult(io)
 savegraph(io::IO, g::AbstractGraph, gname::String, ::GraphMLFormat) = savegraphml(io, g, gname)
 savegraph(io::IO, d::Dict, ::GraphMLFormat) = savegraphml_mult(io, d)
+
+end # module

src/lgcompressed.jl → src/LGCompressed/LGCompressed.jl

@@ -1,3 +1,13 @@
+module LGCompressed
+
+using GraphIO.CodecZlib
+using LightGraphs
+using LightGraphs: AbstractGraphFormat
+
+import LightGraphs: loadgraph, loadgraphs, savegraph
+
+export LGCompressedFormat
+
 struct LGCompressedFormat <: AbstractGraphFormat end
 
 function savegraph(fn::AbstractString, g::AbstractGraph, gname::AbstractString,
@@ -36,4 +46,6 @@ loadgraph(fn::AbstractString, gname::AbstractString, format::LGCompressedFormat)
 
 loadgraph(fn::AbstractString, format::LGCompressedFormat) = loadgraph(fn, "graph", LightGraphs.LGFormat())
 
-loadgraphs(fn::AbstractString, format::LGCompressedFormat) = loadgraphs(fn, LGFormat())
+loadgraphs(fn::AbstractString, format::LGCompressedFormat) = loadgraphs(fn, LGFormat())
+
+end # module

src/net.jl → src/NET/Net.jl

@@ -1,3 +1,14 @@
+module NET
+
+import LightGraphs
+using LightGraphs
+using LightGraphs: AbstractGraphFormat
+
+import LightGraphs: loadgraph, loadgraphs, savegraph
+
+export NETFormat
+
+
 struct NETFormat <: AbstractGraphFormat end
 """
     savenet(io, g, gname="g")
@@ -19,7 +30,6 @@ function savenet(io::IO, g::LightGraphs.AbstractGraph, gname::String = "g")
     return 1
 end
 
-
 """
     loadnet(io::IO, gname="graph")
 
@@ -66,3 +76,5 @@ end
 loadgraph(io::IO, gname::String, ::NETFormat) = loadnet(io, gname)
 loadgraphs(io::IO, ::NETFormat) = Dict("graph" => loadnet(io, "graph"))
 savegraph(io::IO, g::AbstractGraph, gname::String, ::NETFormat) = savenet(io, g, gname)
+
+end # module