🔧 Add '--cleanenv' to default Singularity flags

FCP-INDI · Apr 13, 2022 · c07296c · c07296c
1 parent 0b166d5
commit c07296c
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Showing 2 changed files with 4 additions and 3 deletions.
diff --git a/.github/workflows/test_cpac.yml b/.github/workflows/test_cpac.yml
@@ -19,11 +19,11 @@ jobs:
 
     strategy:
       matrix:
-        platform: [docker]
+        platform: [docker, singularity]
         tag: [latest, nightly]
         go: [1.14]
         python: [3.7, 3.8, 3.9, "3.10"]
-        singularity: [3.6.4]
+        singularity: [3.6.4, 3.7, 3.8]
 
     steps:
     - uses: actions/checkout@v2

diff --git a/src/cpac/backends/singularity.py b/src/cpac/backends/singularity.py
@@ -19,7 +19,8 @@ def __init__(self, **kwargs):
         self.pull(**kwargs, force=False)
         self.options = list(chain.from_iterable(kwargs[
             "container_options"
-        ])) if bool(kwargs.get("container_options")) else []
+        ])) if bool(kwargs.get("container_options")) else [
+            '--cleanenv']
         if isinstance(self.pipeline_config, str):
             self.config = Client.execute(
                 image=self.image,