👷 Don't remove Docker #210
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| # This workflows will upload a Python Package using Twine when a release is created | |
| # For more information see: https://help.github.com/en/actions/language-and-framework-guides/using-python-with-github-actions#publishing-to-package-registries | |
| name: Test cpac | |
| on: | |
| push: | |
| paths-ignore: | |
| - README.rst | |
| pull_request: | |
| jobs: | |
| test_cpac: | |
| runs-on: ubuntu-latest | |
| env: | |
| SINGULARITY_CACHEDIR: $GITHUB_WORKSPACE/.singularity/cache | |
| SINGULARITY_TMPDIR: $GITHUB_WORKSPACE/.singularity/tmp | |
| strategy: | |
| max-parallel: 1 # This'll slow it down but increase stability | |
| matrix: | |
| platform: [docker] | |
| tag: [nightly] # latest | |
| go: [1.14] | |
| python: [3.7, 3.8, 3.9, "3.10", 3.11] | |
| singularity: [3.6.4] | |
| steps: | |
| - name: Maximize space | |
| uses: easimon/maximize-build-space@v8 | |
| with: | |
| remove-dotnet: 'true' | |
| remove-android: 'true' | |
| remove-haskell: 'true' | |
| remove-docker-images: 'false' | |
| - uses: actions/checkout@v3 | |
| - name: Set up Go | |
| uses: actions/setup-go@v4 | |
| with: | |
| go-version: ${{ matrix.go }} | |
| - name: Set up Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python }} | |
| - name: Install --upgrade pip setuptools wheel | |
| run: python -m pip install --upgrade pip setuptools wheel | |
| - name: Set up Singularity | |
| if: ${{ matrix.platform == 'singularity' }} | |
| uses: eWaterCycle/setup-singularity@v7 | |
| with: | |
| singularity-version: ${{ matrix.singularity }} | |
| - name: Prepare Singularity cache and tmp directories | |
| if: ${{ matrix.platform == 'singularity' }} | |
| run: mkdir -p ${SINGULARITY_CACHEDIR} && mkdir -p ${SINGULARITY_TMPDIR} | |
| - name: Install dependencies | |
| run: | | |
| sudo apt-get install libffi-dev \ | |
| flawfinder \ | |
| libgpgme11-dev \ | |
| libseccomp-dev \ | |
| squashfs-tools \ | |
| libssl1.1 libssl-dev \ | |
| libuuid1 uuid-dev | |
| pip install -r requirements.txt | |
| pip install -r requirements-dev.txt | |
| pip install coverage coveralls nipype | |
| - name: Install cpac | |
| run: cd $GITHUB_WORKSPACE && pip install -e . | |
| - name: Test cpac, platform and tag specified | |
| run: | | |
| coverage run --append -m pytest --basetemp=${PWD}/tmp --doctest-modules --platform ${{ matrix.platform }} --tag ${{ matrix.tag }} . | |
| coverage report -m | |
| - name: Test cpac, platform specified, tag unspecified | |
| if: ${{ matrix.tag == 'latest' }} | |
| run: | | |
| coverage run --append -m pytest --basetemp=${PWD}/tmp --doctest-modules --platform ${{ matrix.platform }} . | |
| coverage report -m | |
| - name: Test cpac, platform unspecified, tag specified | |
| if: ${{ matrix.platform == 'docker' }} | |
| run: | | |
| coverage run --append -m pytest --basetemp=${PWD}/tmp --doctest-modules --tag ${{ matrix.tag }} . | |
| coverage report -m | |
| - name: Test cpac, platform and tag unspecified | |
| if: ${{ matrix.platform == 'docker' }} && ${{ matrix.tag }} == 'latest' | |
| run: | | |
| coverage run --append -m pytest --basetemp=${PWD}/tmp --doctest-modules . | |
| coverage report -m | |
| - name: Report coverage | |
| uses: AndreMiras/coveralls-python-action@v20201129 | |
| with: | |
| parallel: True | |
| flag-name: Test cpac ${{ matrix.platform }} with Python ${{ matrix.python }} | |
| continue-on-error: true | |
| finalize_coverage-report: | |
| needs: | |
| - test_cpac | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Finalize coverage report | |
| uses: AndreMiras/coveralls-python-action@v20201129 | |
| with: | |
| parallel-finished: true | |
| continue-on-error: true | |
| update_README: | |
| # Only update README if tests succeed | |
| needs: | |
| - test_cpac | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v2 | |
| with: | |
| fetch-depth: 0 | |
| - name: Install cpac | |
| run: | | |
| export DEB_PYTHON_INSTALL_LAYOUT=deb_system | |
| cd $GITHUB_WORKSPACE | |
| pip install . | |
| - name: Configure Git credentials | |
| uses: oleksiyrudenko/[email protected] | |
| with: | |
| global: true | |
| token: ${{ secrets.GITHUB_TOKEN }} | |
| - name: Update README | |
| run: | | |
| (head -n $(read -d : <<< $(less README.rst | grep ".. BEGIN USAGE" -n); expr $REPLY + 1) README.rst; \ | |
| printf ".. code-block:: shell\n\n cpac --help\n"; \ | |
| cpac --help | sed 's/^/ /'; \ | |
| tail --lines=+$(read -d : <<< $(less README.rst | grep ".. END USAGE" -n); expr $REPLY - 1) README.rst\ | |
| ) > tempREADME && | |
| mv tempREADME README.rst & | |
| wait %1 | |
| if [[ $(git diff --numstat README.rst) ]]; then | |
| git add README.rst | |
| git commit -m ":memo: Update usage from helpstring" | |
| git push origin HEAD:${GITHUB_REF} | |
| fi | |
| shell: bash |