⬆️ Bump nibabel in the production-dependencies group #192
Workflow file for this run
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| # This workflow will test cpac | |
| name: Test cpac | |
| on: | |
| push: | |
| paths-ignore: | |
| - README.rst | |
| permissions: | |
| packages: write | |
| jobs: | |
| set_docker_image: | |
| outputs: | |
| docker_image: ${{ steps.set_docker_image.outputs.docker_image }} | |
| runs-on: ubuntu-latest | |
| steps: | |
| - id: set_docker_image | |
| name: set tag name | |
| run: | | |
| DOCKER_IMAGE="ghcr.io/${{ github.repository }}/api-test" | |
| DOCKER_IMAGE="${DOCKER_IMAGE@L}" | |
| echo "docker_image=${DOCKER_IMAGE}" >> "${GITHUB_OUTPUT}" | |
| build_dry_run_image: | |
| needs: set_docker_image | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Set up Docker Buildx | |
| uses: docker/[email protected] | |
| - name: Log in to GitHub Container Registry | |
| uses: docker/[email protected] | |
| with: | |
| registry: ghcr.io | |
| username: ${{ github.actor }} | |
| password: ${{ secrets.GITHUB_TOKEN }} | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - name: Clear up some space on runner | |
| run: | | |
| sudo rm -rf /usr/local/lib/android | |
| sudo rm -rf /usr/share/dotnet | |
| sudo rm -rf /opt/ghc | |
| sudo rm -rf "/usr/local/share/boost" | |
| - name: Build and push | |
| uses: docker/[email protected] | |
| with: | |
| context: . | |
| file: ./.github/Dockerfiles/c-pac_api.${{ matrix.tag }}.Dockerfile | |
| provenance: false | |
| sbom: false | |
| push: true | |
| tags: | | |
| ${{ needs.set_docker_image.outputs.docker_image }}:${{ matrix.tag }} | |
| strategy: | |
| matrix: | |
| tag: [latest, nightly] | |
| test_cpac: | |
| env: | |
| APPTAINER_CACHEDIR: ${{ github.workspace }}/.apptainer/cache | |
| APPTAINER_TMPDIR: ${{ github.workspace }}/.apptainer/tmp | |
| needs: | |
| - build_dry_run_image | |
| - set_docker_image | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| apptainer: [1.0.0, 1.3.0] | |
| go: [1.14] | |
| platform: [apptainer, docker] | |
| python: ['3.10', 3.11, 3.12] | |
| tag: [latest, nightly] | |
| exclude: | |
| - platform: apptainer | |
| python: 3.11 | |
| - platform: apptainer | |
| python: 3.12 | |
| steps: | |
| - name: Clear up some space on runner | |
| run: | | |
| sudo rm -rf /usr/local/lib/android | |
| sudo rm -rf /usr/share/dotnet | |
| sudo rm -rf /opt/ghc | |
| sudo rm -rf "/usr/local/share/boost" | |
| - uses: actions/checkout@v4 | |
| - name: Set up Go | |
| uses: actions/setup-go@v5 | |
| with: | |
| cache: false | |
| go-version: ${{ matrix.go }} | |
| - name: Set up Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python }} | |
| - name: Install --upgrade pip setuptools wheel | |
| run: python -m pip install --upgrade pip setuptools wheel | |
| - name: Setup apptainer | |
| if: ${{ matrix.platform == 'apptainer' }} | |
| uses: eWaterCycle/setup-apptainer@v2 | |
| with: | |
| apptainer-version: ${{ matrix.apptainer }} | |
| - name: Install cpac | |
| run: cd $GITHUB_WORKSPACE && pip install -e ".[dev,testing,tsconcat]" | |
| - name: Pull images | |
| if: ${{ matrix.platform == 'apptainer' }} | |
| run: | | |
| mkdir -p ${{ env.APPTAINER_CACHEDIR }} | |
| mkdir -p ${{ env.APPTAINER_TMPDIR }} | |
| export APPTAINER_CACHEDIR=${{ env.APPTAINER_CACHEDIR }} | |
| export SINGULARITY_CACHEDIR=${{ env.APPTAINER_CACHEDIR }} | |
| export APPTAINER_TMPDIR=${{ env.APPTAINER_TMPDIR }} | |
| export SINGULARITY_TMPDIR=${{ env.APPTAINER_TMPDIR }} | |
| cpac --platform ${{ matrix.platform }} pull --image ${{ needs.set_docker_image.outputs.docker_image }} --tag ${{ matrix.tag }} | |
| - name: Test cpac, platform and tag specified | |
| run: | | |
| coverage run --append -m pytest --basetemp=${PWD}/tmp --doctest-modules --image=${{ needs.set_docker_image.outputs.docker_image }} --platform ${{ matrix.platform }} --tag ${{ matrix.tag }} . | |
| coverage report -m | |
| - name: Test cpac, platform specified, tag unspecified | |
| if: ${{ matrix.tag == 'latest' }} and ${{ matrix.platform == 'docker' }} | |
| run: | | |
| coverage run --append -m pytest --basetemp=${PWD}/tmp --doctest-modules --image=${{ needs.set_docker_image.outputs.docker_image }} --platform ${{ matrix.platform }} . | |
| coverage report -m | |
| - name: Test cpac, platform unspecified, tag specified | |
| if: ${{ matrix.platform == 'docker' }} | |
| run: | | |
| coverage run --append -m pytest --basetemp=${PWD}/tmp --doctest-modules --image=${{ needs.set_docker_image.outputs.docker_image }} --tag ${{ matrix.tag }} . | |
| coverage report -m | |
| - name: Test cpac, platform and tag unspecified | |
| if: ${{ matrix.platform == 'docker' }} && ${{ matrix.tag }} == 'latest' | |
| run: | | |
| coverage run --append -m pytest --basetemp=${PWD}/tmp --doctest-modules --image=${{ needs.set_docker_image.outputs.docker_image }} . | |
| coverage report -m | |
| - name: Report coverage | |
| uses: AndreMiras/coveralls-python-action@v20201129 | |
| with: | |
| parallel: true | |
| flag-name: Test cpac ${{ matrix.platform }} with Python ${{ matrix.python }} | |
| continue-on-error: true | |
| finalize_coverage-report: | |
| needs: | |
| - test_cpac | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Finalize coverage report | |
| uses: AndreMiras/coveralls-python-action@v20201129 | |
| with: | |
| parallel-finished: true | |
| continue-on-error: true |