1.4.1

• Replaces remote file localization method for adding HTTP headers to only add headers on initial request and not redirects.
• Updated dxpy minimum to 0.297.1 to be able to use cryptography version 2.3 (#106)
• Upgraded bleach to 3.1.5 (#138)
• Constrains pytest version <=5.3.5 to avoid breaking changes in pytest (#139)
• Upgrades Cromwell to version 53.1 in test setup and documentation.

1.4.0

• Added support for YAML data and configuration files (#116)
• Added a Cromwell Server executor (thanks @pamagee!)
• Added ability to specify tests in JSON/YAML (#117)
• Updated docs and testing to latest version of Cromwell (v48)
• Added an optional callback parameter to workflow_runner
• Fix miniwdl executor when there are no inputs (thanks @mlin!)

1.3.0

• Added support for testing workflows on DNAnexus using dxWDL
• Using DNAnexus-related features will cause the user to be automatically logged in to their account if not already logged in (log-in is interactive unless account credentials or a token are specified in the config file)
• Enhanced support for miniwdl and made it the default executor (to configure different default executor(s), see the manual)
• Generate requirements.txt using pip freeze. Note that miniwdl is pegged to a specific version (0.6.4) because we depend on internal functionality; this limitation will be fixed in a future release
• Many improvements to the manual (thanks @mlin for suggestions), including a new "quickstart" example project
• Bugfix: within-project local data file resolution was implemented incorrectly for the case where there are packages (i.e. __init__.py files) in the tests/ folder - it is now fixed.

1.2.1

• Fixes #93 - ensures parent directories exist when localizing a file

1.2.0

• Fix #86 - enable test_data.json file to be located in the same directory as the WDL file
• When comparing BAM files, by default only compare HD, SQ, and RG headers
• Enhance the error message that is displayed when a workflow fails
• Add ability to validate data file digests
• Optionally show progress bar when downloading data file
• Update miniwdl minimum version to 0.5.2, and update the miniwdl executor to use docker swarm
• Update xphyle minimum version to 4.1.3
• Other bugfixes

1.1.1

• Fixes license entry in setup.py for proper rendering to release to PyPI.

1.1.0

• Add ability to create executor plugins
• Add ability to specify which executor (including multiple executors) to use by default and on a test-specific basis
• Add experimental support for Miniwdl executor
• Swtich from delegator.py to subby for executing subprocesses
• Fixes for path finding - test data and imports are now resolved correctly in the cases of "standard" project setups
• Tests are isolated from any local configuration
• Added ability to specify custom URL scheme handlers, and added a handler for files hosted on DNAnexus
• Fixed the makefile to correctly run all the intended targets
• Lots of fixes and improvements to VCF and BAM comparison (see updated docs)
• Add ability to modify comparison options on DataFiles (set_compare_opts method)
• Add support for arbitrary objects in test_data.json
• Improve comparison of expected to actual values, including support for None, dict, and list values
• Add support for comparing gzipped files, using xphyle to detect file format
• Improve assertion error messages
• Add json data type and add ability to localize dict contents as JS

1.0.1

Make some improvements to support different run configurations:

• Workflow files are first searched in the current test context directory, so it is no longer necessary to pass a relative path from the project root to workflow_runner
• Defined the concept of a module root, which is the first directory (starting from the test context directory) up that contains a "tests" folder
  • WDL files under the current module root are imported by default if an import_paths.txt file is not specified
  • The workflow_data_descriptor_file fixture is updated to correctly look for test_data.json in the tests/ directory of the current module
• Complex workflow inputs are now serialized properly, which ensures that data files in arrays or dicts are localized

1.0.0

Initial major release